Cupriavidus basilensis: RR42_m2640
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Entry
RR42_m2640 CDS
T03642
Name
(GenBank) macromolecule metabolism
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cbw
Cupriavidus basilensis
Brite
KEGG Orthology (KO) [BR:
cbw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbw03019
]
RR42_m2640
Enzymes [BR:
cbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RR42_m2640
Messenger RNA biogenesis [BR:
cbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RR42_m2640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
nSTAND3
AAA_22
T2SSE
NACHT
Ssl1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AJG20026
UniProt:
A0A0C4YH46
LinkDB
All DBs
Position
main:complement(2804491..2808459)
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AA seq
1322 aa
AA seq
DB search
MAATPVAGPPVERQPRQPGQARQARPQPANGTPRPPRPERTERTERAPREARRPVRQANP
LPPITFPEALPVSGRREEIAQALLANQVVIVSGETGSGKTTQLPKICLSIGRGPGADGSG
GLIGHTQPRRIAATSTAKRIAQEIGTPLGEHVGYQVRFNDTMSAGASVKLMTDGILLAET
QNDPLLRAYDTIIIDEAHERSLNIDFLIGYLKEILPKRPDLKLVITSATIDASRFAEHFA
QGGKPAPVIEVSGRLYPVEIRYRPIEKDKVGPGEGAPKSAQSKDRDLFDGIVEAVDELCR
LGPGDVLVFLPGEREIREAAEALRKHHPPHTEILPLFARLSVQEQERVFRPSNARRIVLA
TNVAETSLTVPGIRYVVDTGMARVKRYSYRNKVEQLQIEAISQAAANQRAGRCGRVADGV
CIRLYEEADFVSRARFTDPEILRSSLAAVILRMKALKLTAIEEFPFIEPPLGRAIADGYQ
LLQELGAVESVGDDANALTQVGRQLARLPLDPRVARMTLAAREHHCLREVLIIASALSVQ
DPRDRPQEAQEAADQAHRKFMDERSEFLGWVKMWKWFEDAVAHKKTNRQLQDQCRASFLS
HVRLREWRDVHSQLLTTVTEQGWKLNESEPTYEQVHKALLTGLLGNVGCRIEDADGRGRE
YLGARGIKFHLWPGSLIARKVGRWIIGAELIETSRLFARTLAKIEPEWLEQVGRHLLRIS
WSDPHWEKKSGQVMAMERATLYGLVVYQHRRVHYGPMNPAEARELFIRRGLVEGEFDTKL
PFFAHNQRLTREIENLEHKARRQDVLVDDELIFAFYDRLIPAEIHQQATFEQWYQAESAR
ERKLLYLNREELMRHEAAGITTDLFPKLMPVAGVDMSLTYHFEPGSHRDGVTLTVPLYAL
NQVRQERADWLVPGMVKEKVHLLLKSLPQKLRRHCVPLPDYAAGFVDRNAFGEGELLDVL
IADIREQTGTMVKRADFKLETLPAHHAMNFKVVDEHGRQLDMGRNLAQLRAEFGGQAQQS
FQNIAARDVPAAEAGQYENLTSWSFGELPELLEVRKGNQTLYGYPALVDHATHCDVEVFD
DPQEAARIHQAGLRRLFALQLREQVKFLEKNIPGMQQMAMQYMTLGTQEMLRDQIVMLAL
ERACLQAPLPRNEAEFAARKEEGRSRLSLLAQEIARLVGAVLAEYATLPRKLIQAKPFAA
AHADMQAQLTRLMGKHFVVDTPYLQLVHFPRYLKGIAMRVDKIKGDPARDTQRLQEITPL
LQQWQRAETQLRQQGRGVEDARLDEFRWMLEELRVALFAQELRTPVPMSVKRLQKVWEAM
QR
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
gtggccgccacgccggtcgccggcccgccggtcgaacgccagccccggcagccgggccag
gcccggcaagccaggccgcagccggcaaacggcacgccccggccgccgcgcccggagcgc
accgagcgcaccgagcgagcgccccgtgaggcccgccgcccggtgcgccaggccaacccg
ctcccgcccatcaccttccccgaggcgttgccggtatccggccgccgcgaggagatcgcg
caggcgctgctggccaaccaggtggtgatcgtctccggcgagaccggctccggcaaaacc
actcagttgcccaagatctgcctgtcgatcgggcgaggcccgggtgccgacggcagcggc
ggcctgatcggccacacgcagccacgccggattgcggccacctccacggccaagcgcatc
gcgcaggagatcggcacgccgctcggcgagcacgtgggctaccaggtgcgtttcaacgac
accatgtcggcgggcgcgtcggtcaagctgatgaccgacggcatcttgctggccgagacg
cagaacgacccgctgctgcgcgcctacgacaccatcatcatcgacgaggcgcacgaacgc
agcctaaatatcgatttcctgatcggctacctgaaggagatcttgcccaagcggccagac
ctcaagctggtcatcacctcggccaccatcgacgccagccgcttcgccgagcactttgcg
cagggtggcaagcctgcgccggtgattgaggtcagcgggcgtctgtatcccgtggagatc
cgttaccggccgatcgagaaggacaaggtggggcctggcgagggcgcgcccaagtccgcg
caatcgaaagatcgcgacctgttcgacggcatcgtcgaggccgtggacgaattgtgccgg
ctcggcccgggcgatgtgctggtgttcctgcccggcgagcgtgaaattcgcgaggctgcc
gaggcgctgcgcaagcaccatccgccgcataccgagatcctgcccctgttcgcgcgcttg
tcggtgcaggagcaggaacgggtgttccggccttccaacgcgcggcgcatcgtgctggcc
accaacgtggccgaaacctcgctcaccgtgcccggcatccgctatgtggtggataccggg
atggcgcgggtcaagcgctattcctatcgcaacaaggtcgagcaactgcagatcgaggcg
atctcgcaggccgccgccaaccagcgcgccgggcgttgcggccgggtggccgacggcgtg
tgcatccggttgtacgaggaggccgatttcgtcagccgggcgcgctttaccgatccggag
atcctgcgctcgtcgctggctgcggtgatcttgcgcatgaaggcgctgaagctgacggcg
atcgaggaattcccctttatcgagccgccgctgggccgcgccattgccgacggctaccag
ctgttgcaggagctgggcgcggtggaaagcgtgggtgatgacgccaacgcgctgacccag
gtcggccgccagctggcccgcctgccgctggacccccgcgtggcccgcatgacgctggcc
gcgcgcgagcaccattgcttgcgcgaggtgctgatcatcgccagcgcgctgtcggtgcag
gatccgcgcgatcgtccgcaggaggcgcaggaagcggccgaccaggcccaccgcaagttc
atggacgagcgctccgagttcctgggctgggtcaagatgtggaagtggttcgaggacgcg
gtggcgcacaagaagaccaaccgccagctgcaggaccagtgccgcgccagtttcctgtcg
catgtgcgcctgcgcgaatggcgcgacgtgcattcgcagctgctgactaccgtcaccgag
cagggctggaagctcaacgagagcgagcccacctatgagcaggtgcacaaggcgctgctc
acgggattgctcggcaacgtaggttgcaggattgaagacgccgacggccgcgggcgcgag
tacctgggcgcgcgcggcatcaagttccacctgtggccgggctcgctgatcgcgcgcaag
gtcggccgttggatcatcggcgccgagctgatcgaaaccagccggttgtttgcacgcacg
ctggccaagatcgagccggaatggctggagcaggtcggccgccatttgctccgcatcagc
tggagcgatccgcactgggagaagaaatccggccaggtgatggcgatggagcgcgccacg
ctgtacgggctggtggtctaccagcaccggcgcgtgcactacgggccgatgaacccggcc
gaggcacgcgagctgtttatccgccgcgggctggtggaaggcgagttcgataccaagctg
ccgttcttcgcccataaccagcgcctgacgcgcgagatcgaaaacctggagcacaaggcg
cgccgccaggacgtgctggttgacgatgagctgatcttcgcgttctacgatcgcctgatc
cctgccgagattcaccagcaggccaccttcgagcagtggtaccaggctgagagcgcgcgc
gagcgcaagctgctttacctgaatcgcgaggagctgatgcggcacgaggcggctggtatc
accaccgacctgtttcccaagctgatgccggtggcgggcgtggatatgtcgctgacgtac
cacttcgagcccggcagccatcgcgatggcgtgacgctgacggtgccgctgtacgcgctt
aaccaggtgcgccaggagcgcgcggactggctggtgccgggcatggtcaaggagaaggtg
cacctgctgctcaagtcgctgccgcagaagctgcgccgccattgcgtgccgctgccggat
tacgcggcgggcttcgtcgatcgcaatgcctttggcgagggcgagttgctggatgtgctg
attgccgacatccgcgagcaaaccggcaccatggtcaagcgcgccgacttcaagctggag
accttgcccgcccatcacgccatgaacttcaaggtggtggacgagcacggccggcaatta
gacatgggccgcaacctggcgcagttgcgcgccgagtttggcgggcaggcgcagcagtcg
ttccagaacatcgccgcgcgcgatgtgccggcggccgaggcggggcaatacgagaacctg
accagctggtccttcggcgaattgcccgagctgctggaggtgcgcaagggcaaccagacg
ctgtacggctatcctgcgctggtcgatcacgccacgcattgcgacgtggaggtgttcgac
gatccgcaggaagccgcgcgcatccatcaagccgggctacgccgcctgtttgcgctgcag
ttgcgcgagcaggtgaagttcctggagaagaacatccccggcatgcagcagatggcgatg
cagtacatgacgctgggcacgcaggagatgttgcgcgaccagatcgtgatgctggcgctg
gagcgggcctgcctgcaggcgccgctgccgcgcaacgaggctgagttcgccgcccgcaag
gaagaagggcgctcgcgcctgagcctgctggcgcaggagatcgcccggctggtgggggca
gtgctggccgagtatgcgacgctgccgcgcaagctgatccaggccaagccgttcgccgcg
gcgcatgccgacatgcaggcgcagctcacacggctgatgggcaagcattttgtggtcgat
acgccttacctgcagttggtgcatttcccgcgctacctgaagggcatcgccatgcgcgtc
gacaagatcaagggcgacccggcgcgcgacacccagcggctgcaggaaatcacgccgctg
ctgcagcaatggcagcgcgccgagacgcagttgcggcagcaggggcggggcgtggaagac
gcgcgcctggatgagttccgctggatgctggaagagctccgcgtggcgctgttcgcgcag
gagttgcgcacgcccgtgccgatgtcggtcaagcgtctgcaaaaggtgtgggaagccatg
cagcgctga
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