Candidatus Symbiobacter mobilis: Cenrod_1117
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Entry
Cenrod_1117 CDS
T02877
Symbol
rpoD
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
cbx
Candidatus Symbiobacter mobilis
Pathway
cbx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cbx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Cenrod_1117 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbx03021
]
Cenrod_1117 (rpoD)
Transcription machinery [BR:
cbx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cenrod_1117 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
MscS_porin
SPO22
Motif
Other DBs
NCBI-ProteinID:
AGX87210
UniProt:
U5N7C6
LinkDB
All DBs
Position
1205727..1208360
Genome browser
AA seq
877 aa
AA seq
DB search
MCARKTQKSDTTPKPEASLQPAPLPSVEPSIQLEETTPPVAASETPRAPKPSARKTAASN
TVASKSAGASAGKATKTAPAASAITPKTTPQTPSKIPSKTAAKTTPKTIPKIAPKTAPKT
ALDGPAPTAPVHNPDTPTADVVADAPSTPSPTTATGDTAAPRSRKKTPAPAKAAAPVSPP
TEAPAPAAPVAAAPAALVGKSKMPPPTPAAPPPGNAAGIPHAASAIDDKSKPLRVKISKA
KERALMKEFGLDETVLSEEDLAKRRQRLKLLIKLGKTRGYLTHGEISDHLPDKLIDAETL
EVVISMLNDMGVAVYEHTPDTETLLLTQNGPTASTEEEAEEEAEAALSTVDSEFGRTTDP
VRMYMREMGSVELLTREGEIEIAKRIEGGLMAMMAAISDSPASIAEILQLGEDIRANKVV
ITSIIDGFTNPNEADDYVAEEDYDEFDLEEDDDGGTKALTKKLEELRAEALVRFDRLRAQ
HEQLGAIHAEQGYGTPDYVRVQKTLSEELMSVRFTARCIEKLCDMVRAQVEKIRQKEREL
RKIIVDRCGYPHTAFIAEFSGRDRHHHRVPSHLLDKQWIERQAAAGKPWSASLARHIPPV
QELQQALIDLQSQVVIPLDQLKDINRRMIEGESSSRAAKKEMIEANLRLVISIAKKYTNR
GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI
ETINKMNRFSRQHLQEHGHEPDASQLAERMDIPEDKIRKIMKIAKEPVSMESPIGDDEDS
HLGDFIEDSANTTPVDAAFQAGLRDVMKDVLDTLAPREAKVLRMRYGIEMTNDHTLEEVG
KQFDVTRERIRQIEAKAVRKLKHPSRSDKLRSFTDNL
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcacgcaaaacccaaaaatccgacaccacccccaagccggaagcatcgttgcag
ccagcccctttgccttcagtcgagccatcaatccagcttgaagaaaccaccccacccgtc
gcggcttcggagacaccccgtgctcccaagccgtctgcccgcaaaaccgcagcgagcaac
accgtagcgagcaaaagcgccggtgcatccgcaggcaaagcgacaaagaccgcccctgct
gcatctgctatcactccgaagactactccgcagaccccttcgaagattccttcgaagact
gctgcgaagactactccgaagactattcccaagattgcgcccaagactgccccaaagact
gctctcgatgggcctgcccctaccgcccctgtccacaaccctgacacccctactgccgat
gtagtcgccgacgcgcccagcaccccctcccctactacagccactggcgacaccgctgcg
ccgcgtagccgcaaaaaaaccccggcaccggccaaggctgccgctcccgtatctccgcct
acggaggcccccgcccctgctgcacctgtggctgcagccccggccgctcttgtgggaaaa
agcaagatgccgccgcccacaccggcggctccccctcccggcaacgctgcgggcattccc
cacgccgccagtgctatcgatgacaagagcaagccactgcgcgtcaagatcagcaaagcc
aaggaacgtgcgctgatgaaggaattcgggctggacgaaaccgttctgtccgaagaagac
ttggccaagcgcaggcaacggctgaagctgctgatcaagcttggaaaaacccgtggctac
ctgacccacggggaaatttccgaccatctccctgacaagctcatcgacgccgaaaccctc
gaagtcgtcatttcgatgctgaacgacatgggcgtggcggtctacgaacacaccccggat
accgaaacgctgctgctcacccaaaacgggccgactgcatcgaccgaagaagaagccgaa
gaagaagccgaagccgcgctgagcaccgtcgatagcgaattcggccgcactaccgacccc
gtgcgcatgtacatgcgcgaaatgggttcggtcgagctgctgacgcgagaaggggaaatc
gaaatcgccaaacgcatcgaaggtggcctcatggccatgatggcggccatttccgattcc
ccggccagcatcgccgaaattttgcagctcggcgaggacattcgcgccaacaaggttgtc
atcacgtcgatcatcgatgggttcaccaaccccaacgaagccgacgactacgttgccgag
gaagactacgacgaattcgacttggaggaggacgacgacggaggcaccaaagcgctgacc
aaaaagctcgaagaactccgtgccgaagcgctcgtccgcttcgaccgcctgcgggcgcaa
cacgaacagttgggtgccatccatgcggagcaagggtatggaacccccgactatgttcgc
gtccagaagaccctgtccgaagagctgatgtcggtgcgcttcacggcccggtgcatcgag
aaattgtgcgacatggtgcgcgcccaggtcgaaaagattcggcagaaagaacgcgagctg
cgcaaaatcatcgtcgaccgctgcgggtacccgcataccgcgttcatcgccgaattcagc
gggcgcgaccggcaccaccaccgcgtaccgagccacctgctcgacaagcagtggatcgaa
cgccaagccgctgcgggcaagccttggagcgcgtcgctcgctcgacacattccccccgtg
caggagttgcagcaggcgctcatcgacctgcaatcgcaggtggtcatcccccttgatcag
ctcaaggacatcaaccgccgaatgattgagggcgagtcttcctcccgcgcagccaagaag
gaaatgatcgaagccaacctgcgcctggtcatttcaattgccaagaaatacaccaaccgg
ggtttgcaattccttgatctgatccaggaagggaacatcggcctgatgaaagctgtcgac
aagttcgagtaccggcgcggctacaagttctccacctacgcgacgtggtggattcgccag
gccatcacccgctcgattgcagaccaggcacggacgatccgcattcccgtacacatgatc
gagacgatcaacaagatgaaccgcttcagtcggcagcatctgcaagagcacggccacgaa
cccgatgcttcccaactcgcggagcgcatggacattcccgaggacaagatccgcaagatc
atgaaaatcgccaaggaacccgtgtcgatggaatctcccatcggcgacgacgaggacagc
cacctcggcgatttcatcgaggacagcgccaacaccacccccgtcgatgccgcatttcag
gccgggttgcgggatgtgatgaaggacgtgctcgacaccctggccccccgcgaagccaag
gtacttcggatgcgctacggcatcgagatgacgaacgaccacaccctggaagaagtgggc
aaacagttcgacgtcacccgcgaacgcatccgccaaatcgaagccaaggcagtgcgcaag
ctcaagcaccccagccggtcggacaagctacgcagctttaccgacaacctatag
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