Cervus canadensis (wapiti): 122443199
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Entry
122443199 CDS
T07554
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
ccad
Cervus canadensis (wapiti)
Pathway
ccad04151
PI3K-Akt signaling pathway
ccad04510
Focal adhesion
ccad04512
ECM-receptor interaction
ccad04611
Platelet activation
ccad04820
Cytoskeleton in muscle cells
ccad04926
Relaxin signaling pathway
ccad04933
AGE-RAGE signaling pathway in diabetic complications
ccad04974
Protein digestion and absorption
ccad05146
Amoebiasis
ccad05165
Human papillomavirus infection
ccad05205
Proteoglycans in cancer
ccad05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
ccad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122443199 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122443199 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122443199 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122443199 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
122443199 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
122443199 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
122443199 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
122443199 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
122443199 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
122443199 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
122443199 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
122443199 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccad00536
]
122443199 (COL1A1)
Glycosaminoglycan binding proteins [BR:
ccad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122443199 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
122443199
NCBI-ProteinID:
XP_043327093
LinkDB
All DBs
Position
1:complement(24378578..24396315)
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AA seq
1463 aa
AA seq
DB search
MFSFVDLRLLLLLAATALLTHGQEEGQEEGQEEDIPPVTCVQNGLRYHDRDVWKPVPCQI
CVCDNGNVLCDDVICDELKDCPNAKVPTDECCPVCPEGQESPTDQETTGVEGPKGDTGPR
GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGISVPGPM
GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP
GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQM
GPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPR
GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ
GPSGPPGPKGNSGEPGAPGSKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPAGLP
GPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLT
GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVP
GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ
GVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQ
GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDK
GETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP
GPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA
GKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVV
GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE
GSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPV
GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR
GPPGSAGTPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDLSFL
PQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRD
LKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKDK
RHVWYGESMTGGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQT
GNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIID
VAPLDVGAPDQEFGFDVGPVCFL
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg
cacggccaagaggagggccaagaagaaggccaagaagaagacatcccaccagtcacctgc
gtacagaacggcctcaggtaccatgaccgagacgtgtggaaacccgtgccctgccagatc
tgtgtctgcgacaacggcaacgtgctgtgcgatgacgtgatctgcgacgaacttaaggac
tgtcctaacgccaaagtccccacggacgaatgctgccccgtctgccccgaaggccaggaa
tcacccacggaccaagaaaccactggagtcgagggacccaaaggagacactggcccccga
ggcccaaggggacccgccggcccccctggccgagatggcatccctggacaacctggactt
cccggaccccctggaccccccggacctcccggaccccctggcctcggaggaaactttgct
ccccagttgtcttatggctatgatgagaaatcaacaggaatttccgtgcctggtcccatg
ggtccttctggtcctcgtggtctccctggcccccctggcgcacctggtccccaaggtttc
caaggcccccctggtgagcctggcgagcccggagcctcaggtcccatgggtccccgtggt
ccccctggcccccctggcaagaacggagatgatggtgaagctggaaagcctggtcgccct
ggtgagcgcgggcctcctggacctcagggtgctcggggattgcctggaacagctggcctc
cctggaatgaagggacacagaggtttcagtggtttggatggtgccaagggagatgctggt
cctgctggccccaagggtgagcctggtagccctggtgaaaatggagctcctggtcagatg
ggcccccgtggtctgcctggtgagagaggtcgccctggagcccctggccctgctggtgct
cgaggaaatgatggtgctactggtgctgctggtccccctggtcccactggccccgctggt
cctcctggtttccctggtgctgtgggtgctaagggtgaagctggtccccaaggaccccga
ggttctgaaggtccccagggtgtacgtggtgagcctggcccccctggccctgctggtgct
gctggccctgctggcaatcctggtgctgatggacagcctggtgctaaaggtgccaatggc
gctcctggtattgctggtgctcctggcttccctggtgcccgaggcccctctggaccccag
ggccccagcggcccccctggtcccaagggtaacagcggtgaacctggtgctcctggaagc
aaaggagacactggcgccaagggagaacctggtcccactggtattcaaggcccccctggc
cccgctggggaagaaggaaagcgaggagcccgaggtgaacccggacctgccggcctgcct
ggaccccctggcgagcgtggtggacctggtagccgtggtttccctggtgccgatggtgtt
gctggtcccaagggtcctgctggtgaacgcggttctcctggccctgctggccccaaaggt
tctcctggtgaagctggtcgccccggtgaagctggtctgcctggtgccaagggtctgact
ggaagccctggcagccctggtcctgatggcaaaactggcccccctggtcctgctggtcaa
gatggccgccctggacccccaggccctcccggtgcccgtggtcaggctggcgtgatgggt
ttccctggacctaaaggtgctgctggagagcctggcaaagctggagaacgaggtgttccc
ggaccccctggcgctgttggtcccgctggcaaagatggagaagctggagcccagggaccc
ccaggacctgctggccccgctggtgagagaggtgaacaaggccctgctggctcccccgga
ttccagggtctccctggccctgctggtcctcctggtgaagcaggcaaacctggtgaacag
ggtgttcctggagaccttggtgcccccggcccctctggagcaagaggcgagagaggtttc
cccggtgagcgtggtgtgcaaggacctcccggtcctgcaggtccccgtggggccaatggt
gctcctggcaacgatggtgctaagggtgatgctggtgctcctggagcccccggtagccag
ggtgcccctggccttcaaggaatgcctggtgaacgaggtgcagctggtcttccaggccct
aagggtgacagaggggatgctggtcccaaaggtgctgatggtgctcctggcaaagatggc
gtccgtggtctgactggtcccattggtcctcctggccccgctggtgcccctggtgacaag
ggtgaaactggtcctagcggcccagctggtcccactggagctcgtggcgcccccggtgac
cgtggtgagcctggtccccccggccctgctggcttcgctggcccccctggtgctgatggc
caacctggtgctaaaggcgaacctggtgatgctggtgctaaaggtgatgctggtcctccc
ggccctgctggacctgctggaccccctggccccattggtaacgttggtgctcctggaccc
aaaggtgctcgtggcagcgctggtccccctggtgctactggtttcccaggtgctgctggc
cgagtcggtccccctggcccctctggaaatgctggaccccctggccctcctggccctgct
ggcaaagaaggcagtaaaggcccccgtggtgagactggccccgctgggcgtcccggtgaa
gtcggtccccctggtccccctggccccgctggtgagaaaggagcccctggcgctgacgga
cctgctggcgctcctggcactcctggacctcagggtattgctggacaacgtggtgtggtt
ggcctgcccggtcagagaggagaaagaggcttccccggtcttcctggcccctctggtgaa
cccggcaaacaaggtccttctggagcaagtggtgaacgtggcccccctggtcccatgggc
ccccctggattggctggaccccctggcgagtctggacgtgagggagcacctggtgccgaa
ggatcccccggacgagatggttctcctggccccaagggtgaccgtggtgagaccggccct
gctggacctcctggtgctcctggcgctcccggtgcccccggccctgtcggacctgctggc
aagagcggtgatcgtggtgagactggtcctgctggtcctgctggtcccattggccccgtt
ggtgcccgtggccccgctggaccccaaggcccccgtggtgacaagggtgaaacaggcgaa
cagggcgacagaggcattaagggtcaccgtggcttctctggtctccagggtccccctggc
cctcccggctctcctggtgagcaaggtccttccggagcctctggtcctgctggtccccgc
ggtccccctggctctgctggtactcctggcaaagatggactcaatggtctcccaggcccc
atcggtccccctgggcctcgaggtcgcactggtgatgctggtcctgctggtcctcccggc
cctcctggaccccctggtccccctggtcctcccagcggcggctacgacttaagcttcctg
ccccagccacctcaagagaaggctcacgatggtggccgctactaccgggctgatgatgcc
aatgtggtccgtgaccgtgacctcgaggtggacaccaccctcaagagcctgagccagcag
atcgagaacatccggagccctgaaggcagccgcaagaaccccgcccgcacctgccgtgac
ctcaagatgtgccactctgactggaagagcggagaatactggattgaccccaaccaaggc
tgcaacctggatgccattaaggtcttctgcaacatggagactggtgagacctgtgtgtac
cccactcagcccagcgtggcccagaagaactggtacatcagcaagaaccccaaggacaag
aggcacgtctggtacggcgagagcatgaccggcggattccagttcgagtacggcggccag
ggctccgatcctgccgatgtggccatccagctgactttcctgcgcctgatgtccaccgag
gcctcccagaacatcacctaccactgcaagaacagcgtggcctacatggaccagcagact
ggcaacctcaagaaggccctgctcctccagggctccaacgagatcgagatccgggccgag
ggcaacagccgcttcacctacagcgtcacctacgacggctgcacgagtcacaccggagcc
tggggcaagacagtgatcgaatacaaaaccaccaagacctcccgcttgcccatcatcgat
gtggcccccttggacgttggcgccccagaccaggaattcggcttcgacgttggccctgtc
tgcttcctgtaa
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