Cyanistes caeruleus (blue tit): 111939921
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Entry
111939921 CDS
T05602
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111939921 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccae03041
]
111939921 (DDX42)
Enzymes [BR:
ccae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111939921 (DDX42)
Spliceosome [BR:
ccae03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111939921 (DDX42)
Complex B
111939921 (DDX42)
Complex C
U2 SnRNP specific factors
111939921 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
111939921
NCBI-ProteinID:
XP_023798164
LinkDB
All DBs
Position
27
AA seq
1049 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQSAASPESPAAAAAKGVPGFPSTGSLSSSPTFP
SAGAPAFNSANAGTSGREGSGGIVRERYNDTRNSRHSEAPRRGDGAGRGDGAGRGEGAGR
GEGAGRYNDAQRYGDAQRHNDAQRHNDPQRYNDPQRYNDPQRYNDPQRYNDPQRYGDPQR
YGDPQRYGDPQRYGDAQRYNDAQRYNDAQRYNDAQRYGDTQRYGDAQRHNDPQRYGDAQR
YGDAQRDSGGSSRHSDPSRHGDVQRHGEGRHFSDLPGGNRNNGDSRTSEGRNSESRNGEN
RREANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtacaaagagaggctttgggtttggtggatttgcc
ataacacctggcaagaaagaggagccaaagctgtctcagcagtcccacagtgcttttggc
accgctgggtcctcggcagcatttgcaaaatcagggcctcctcagttgccttccttctac
aaaattgggtcaaagcgagccaattttgatgaggagaatgcgtactttgaggatgaggag
gaagattccagcaatgtggaattgccctacattcccgcagagaattcccccactcggcag
cagttccattccaagtcggcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcgtat
tttcgctacatggctgaaaaccccactgctggtgtggtgcaagaggaggaagaggataac
ctggagtatgatagtgatgggaatccgattgcaccgtccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatacccaccgtttgagaaaaacttctatgatgag
catgaggagatcaccagcctgacccctcagcaagtggtggagttacggcataagctgaat
ctccgggtctccggggctgctcctccaaggcctggaagtagtttcgctcattttgggttt
gatgagcaacttatgcaccagattaggaaatctgaatatacccaacccactccaatacaa
tgtcagggtgttccagtggcactaagtggcagagacatgattgggatagccaagactgga
agtgggaaaacagctgccttcatctggccgatgctgatccacatcatggatcagaaggag
ctggagccaggggatggtcccattgcagtgatcgtctgcccgaccagggagctctgccag
cagatccactccgagtgcaagcgctttggcaaggcctataacctgcgctccgtggccgtg
tacggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagatcgtg
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaggctacaaacctgcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatggggtttgagtatcag
gtcagatcaattgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccacg
ttccgtaagaagattgagaaattggcccgggatattctgatcgacccaattcgggttgtg
caaggagacattggagaggcaaatgaagatgtcactcagattgtggagattttcccctct
gggcccagcaagtggaactggctgacgcggcgccttgtggagttcacatcctccgggagc
gtcctcctctttgtcaccaagaaagccaacgcagaggaactggccaataacctcaagcag
gaggatcataacctggggctgcttcatggagacatggaccagagtgagaggaataaagtc
atttcggaatttaagaaaaaggggatccccatcctggtagctactgatgtggcagctcga
gggttggatatcccttcaatcaagactgtcatcaactacgacgtggctcgggacatcgac
acccacacgcatcggatcggccgcaccggccgtgcgggggagaagggagtggcctatacc
ctgctgacccccaaggacagcaacttcgctggggaccttgtcagaaacctggagggtgcc
aaccagcacgtttccaaagagctgctggatttggcaatgcagaatccgtggttccggaaa
tcccgatttaaaggaggaaagggcaagaagctgaatattggtggcggtggcttgggatac
cgtgagcgccctgggctgggttcagaaaatactgaccgtggaaacaacaacagtgtgatg
agcaactatgaggcctacaagccatccacaggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaa
aagactgggagctctgctgctggtgccagtggctggaccagcgccgggagcctgaattcc
gtcccgacgagttcagcacagcaaagtgccgccagtcccgagagccccgcggccgcggca
gcaaagggagtcccgggtttccccagcacgggcagcctgagcagcagccccaccttcccc
agtgcgggagcgccggccttcaacagcgcaaacgccggcaccagcggtcgcgagggcagc
ggtggcatcgtcagagaacggtacaacgacacccggaacagccggcacagcgaggccccg
cggcgcggggacggcgctggccgaggggatggcgctggccgaggggagggcgctggccga
ggggagggtgctggtcgctacaacgatgcccagcgttacggtgatgcccaacgccacaat
gatgcccagcgccacaacgatccccagcgctacaacgatccccagcgttacaacgatccc
cagcgttacaacgatccccagcgctacaacgatccccagcgctacggtgatccccagcgc
tacggtgatccccagcgctacggtgatccccagcgctacggtgatgcccagcgctacaac
gatgcccagcgctacaacgatgcccagcgctacaacgatgcccagcgctatggtgatacc
cagcgttacggtgatgcccagcgccacaacgatccccagcgttacggtgatgcccagcgt
tacggtgatgcccagcgcgacagtggcggcagcagccggcacagtgacccctcccggcac
ggtgacgtccagcgccacggcgagggccggcacttcagcgacctgccagggggcaaccgc
aacaacggtgacagcaggaccagcgagggtaggaacagcgagagcaggaatggagagaac
aggagagaggccaacagccgagacaacaagacagatggttttgctgtcccagagccccca
aaacggaagaagagccggtgggacagttaa
DBGET
integrated database retrieval system
