Cajanus cajan (pigeon pea): 109798383
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Entry
109798383 CDS
T04868
Name
(RefSeq) pre-mRNA-processing protein 40C isoform X1
KO
K12824
transcription elongation regulator 1
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109798383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109798383
Spliceosome [BR:
ccaj03041
]
Complex A
U1 snRNP components
U1 related factors
109798383
Complex B
109798383
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
109798383
NCBI-ProteinID:
XP_020214216
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All DBs
Position
4:4624674..4638772
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AA seq
967 aa
AA seq
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MASPAWLPQDPQPQPPVSGETPLPVPSSAPATPSSAPPPPPPPPFAYGVLHSVNASVSSQ
HSSTHPAMKSNSSANPMAVQPQVPGVSSHAAPSFSYNIPQSGASFSSNLHHAQSNTNMSD
SAAQDVSKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTALPFPVHPLMPTPGN
PGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSMPAMA
APPQGVWLQPPQMSGVLRPPYLQYPAPFPAPFPFPARGVALPAVPIPDSQPPGVTPVGAV
GGTSTLVSGHQLRGTIALQTEVISGPADDKKKLNAVETQNQDAASNDQLDAWTAHKTEAG
IIYYYNAVTGESTYDKPAGFKGEPHQVSAQPTPVSMTDLPGTDWMLVSTSDGKKYYYNNR
TKTSCWQIPNEVTELKKKQDGDVTKDHLMSVPNTNVLSDRGSGLVTLNAPAINTGGRDAA
ALKSSSQQTSSSALDLIKKKLQDSGTPVASSAIPAPSVQTGSESNGSKIVESTTKGLQVD
TNKDKQKDTNGDANISDTSSDSEEEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKI
VFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQRAAIEGFKQLLDEALEDINHNT
DYQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAAGFKSMLKER
GDIIFNSRWSRVKESLRDDPRYKSVRHEDREVLFNEYISELKAAEYAAERETKAKREEQD
KLRERERELRKRKEREEQEMERVRVKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEK
DPQGRATNSDLDPTDTEKLFREHVKMLQERCAHEFRVLLAEVLTSEAASRESDDGKTVLN
SWSTAKRVLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHDSREDKHKDSKPRNSLES
GRSHERK
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgcccgcgtggttgccgcaggacccacagccacagccacctgtgtccggagaa
acgcctcttcccgtgccttcttccgctcctgcaactccttcttccgctccgccaccgcca
ccaccaccgccattcgcgtacggcgtgcttcacagtgttaacgcttccgtcagttctcag
cactcatcgacacatcctgcgatgaaatccaattcttcagcaaatcccatggctgttcaa
cctcaagtacctggtgtctcttcacatgctgctccttcattttcgtataatattccccag
agtggtgcctctttttctagcaacctgcatcatgcacaatctaacactaatatgtcggat
tctgctgcacaggatgttagtaaattgtcatctgcatcaagtatccctcattctgtccct
gctcatacttctacatccataatgccgccaccctctgaccctaattatcgcccagctact
tcatggatgccaactgccctgccttttcctgtgcatcctttgatgcctactccagggaat
cctggccctcctggattagcatcatccgcgataatttcctccaatcctgctgctccatcc
acaggcacagattcttccccagctgcattactgagaccaaacatgccaacttcagccatt
gcatcagatcctactgcccctcagaaaggtttaccctatccatccatgcctgccatggct
gctccccctcagggagtttggttacagcccccgcagatgagtggtgtacttagaccacca
tatcttcaataccctgctccttttcctgctccctttccatttccagcgcgtggtgttgct
ctccctgctgttccaatacctgattctcaacctcctggtgttacacctgtgggtgctgtt
ggtggcacttctacacttgtttctggccatcagctgaggggaacaattgctttgcaaaca
gaagttatttcagggcctgctgatgataagaagaaattaaatgctgttgaaacccaaaat
caggatgctgctagtaatgatcaattagatgcctggacagcccacaagactgaagcagga
attatatactattataatgctgtgacaggagaatcaacgtatgataaacctgctggtttt
aaaggggagcctcaccaagtttctgctcagcccactccagtttcaatgacggatttgcct
ggaactgattggatgttggtctctactagtgatggaaaaaagtattactacaacaatcga
accaagactagctgctggcaaatcccaaatgaggtgactgaattgaaaaagaagcaggat
ggtgatgttacaaaagatcatttaatgtcagttccaaatactaatgtattgtctgataga
gggtctggattggttactctgaatgctcctgctattaatactggtggtcgtgatgctgca
gctcttaaatcctctagtcagcagacctcatcatcggcactggatttgatcaagaagaaa
ttgcaggactcaggaacacctgttgcttcctctgctattcctgcaccatcagtacaaaca
ggatctgaatcaaatggttcaaaaatagttgaatctacaactaagggcctgcaagtagat
actaacaaagataaacaaaaagatactaatggtgatgctaacatctctgacacatcctca
gattctgaagaagaagatagtggaccttcaaaggaggagtgcatcattcaatttaaggag
atgctcaaggagcgaggggtggcaccattctcaaagtgggagaaagaactgccaaagata
gtatttgatccacgttttaaggccatcccgagttattctgctaggagatccttgtttgag
cattatgttaaaactcgtgctgaagaagaacgtaaagaaaaacgtgctgcacagagggct
gcaattgaaggatttaagcagttattggatgaagccttggaggatattaatcacaatact
gattatcaaacttttcggaagaaatggggaaacgatccacggtttgaggcattggatcgc
aaagaacaagagcacctattgaatgaaagagtgcttcctttgaagaaagctgctgaagaa
aaggctcaagcaatgcgtgcagctgctgcagcaggttttaaatcaatgcttaaggagcga
ggagatataatttttaactcccgttggtccagggttaaagaaagtttaagggatgaccca
agatataaatctgtgaggcatgaggatagagaagttttgttcaatgagtatatatctgaa
ctgaaagctgctgaatatgcagcagaaagagagaccaaagctaaaagggaggagcaggac
aagctgagggaaagagaacgggagctgcgcaaaaggaaggagagagaagaacaggaaatg
gaaagggtgcgagttaaaattcgaagaaaggaggcagttacttcttttcaagctttactt
gtggagacaatcaaagaccctctggcatcatggacggaatctaagcctaaattagaaaag
gatcctcaaggacgtgcaactaattctgatctcgatccaactgacactgaaaagctcttt
cgggaacatgttaagatgcttcaggaacgttgtgcacacgaatttagagttctcttagct
gaagtattgacctccgaagctgcatctcgagaaagcgacgatggaaaaacagtgcttaat
tcttggtctacagctaaacgagttttaaaatctgatccaagatataacaaagttccaaga
aaagaaagagaagctctatggcgccgctatgcagaggatatgctgcgtcggcaaaaagca
tctcatgattccagggaagacaaacataaagattctaaacctagaaattctctagaatct
ggaagatcgcatgagagaaaataa
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