Cajanus cajan (pigeon pea): 109799973
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Entry
109799973 CDS
T04868
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109799973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109799973
Spliceosome [BR:
ccaj03041
]
Complex B
Other components
Prp19-related factors
109799973
Complex C
109799973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
RRM_occluded
zf-CCCH_3
zf-CCCH_4
zf-CCCH
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
109799973
NCBI-ProteinID:
XP_020216231
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All DBs
Position
6:3119333..3124556
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AA seq
486 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPEDESIKTLYVGGLDARVT
EQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPLQQERSYYP
SMDPQRMGALIPSQDGPPSGPSGPGENKPSLEKQQMQHYPRPMMPPPPGQYHHQYYPPYG
YMPPAPPYHQYPPPAYNSAVPPSQPPPSNHPYQQHSMQPGSSQTGTGQAAAAPVETGTST
SGSQQQ
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctccgagaccacgaagccgacggttgggagcgctccgatttcccc
atcatctgcgaatcctgcctcggcgacagcccctacgttcgaatgacaagagcagagtat
gacaaggagtgcaaaatttgtacaaggcctttcactgtttttagatggagacctggtcga
gatgcaagatataagaaaactgagatctgccagacatgtagtaaattgaaaaatgtctgt
caagtgtgccttctggatcttgaatatggactaccagttcaagttcgggacacggctctt
agtatcgattccaatgatgccattccaaagagtgatgttaatagggagtattttgctgaa
gagcatgaccgcagggctagagctggtatagattatgaatcctcttatggtaaagtacgg
ccaaatgatactatcctgaagcttcaaaggactacaccatattacaaaagaaatcgggcg
catatttgcagtttctacataaggggtgaatgtaccagaggagctgagtgcccttataga
catgagatgcctgtaactggggaattgtctcaacaaaatattaaagaccgttattatggg
gtgaatgatccagtggctttgaagctacttggcaaggcaggagagatgaccactctggag
gctcctgaggatgagagcattaaaactctttatgttggtggacttgatgccagggtcact
gagcaggacttgcgggatcacttctatgcccatggagaaattgaatccatcaaaatggtt
ctccaacgggcttgtgcttttgtcacatacacaaccagagaaggtgcagaaaaggcagca
gaagaactttccaacaaactggttattaagggcctaaggctaaagctgatgtggggcagg
cctcagacatcgaaacctgaatcagatggctctgatcaagcaaggcagcaggcctccgtt
gctcacagtggattgttacctcgggcagttatatctcagcagcagaaccaggaccaaacc
caaggaatgctttactacaacaatccaccacctctacagcaggaaagaagctactaccca
tcaatggatcctcaaagaatgggagctcttattccatcacaggatggtcctcctagtggg
ccttctgggcctggggagaacaagcccagtttggagaagcagcaaatgcaacattatcct
cgtccaatgatgccccctccacctggccaatatcatcatcagtattatcctccatatggt
tatatgccaccagctcctccttatcatcagtacccaccacctgcatacaattctgcagtg
cctccatcccaacctcctccctcaaatcatccttatcagcagcattctatgcagccaggg
tcttcacagacaggaactggacaagccgcagctgccccagttgaaactggaacatcaaca
tcagggtcacagcagcaatga
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integrated database retrieval system
