Cajanus cajan (pigeon pea): 109816006
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Entry
109816006 CDS
T04868
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109816006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccaj03036
]
109816006
Chromosome and associated proteins [BR:
ccaj03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
109816006
Chromatin remodeling factors
NuRD complex
109816006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Chromo
Helicase_C
ResIII
PHD
HDA2-3
zf-HC5HC2H
DEAD
zf-HC5HC2H_2
C1_2
PHD_4
PHD_2
DUF2703
PolC_DP2
C1_1
Motif
Other DBs
NCBI-GeneID:
109816006
NCBI-ProteinID:
XP_020236439
LinkDB
All DBs
Position
Unknown
AA seq
703 aa
AA seq
DB search
MSSSFGLRARSKHRPLYTIDESDDDSDVLPRKRKKPQEKIEKIVRSETKDNSCQACGESG
NLLSCETCTYSFHPSCILSPLKSPFRDNWRCPECVSPLNDIDKILDCEMRSTVAGESDAT
KLDSKQNFVKQYLVKWKGLSYLHCTWVPEEEFLKAFKDHPGLKAKVNNFHRNMTSADIPN
EDFVAIRPEWTTVDRILACRGHEDKKEYLVKWKELPYDECYWELETDVSAFQTEIERYNT
FQSRSRKIFSSKKKGSVKDGAKLNTQKKEFQQYEHSPQFLTGGTLHSYQLEGLNFLRFSW
SKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNV
VMYFGSAKGRAFIREHEFYFPKNQKRIKNKKSRQIVDESKQERIKFDVLLTSYEMINSDT
SSLKPIKWECMIVDEGHRLKNKDSKLFSSLQQYSSKHRVLLTGTPLQNKLDELFMLMHFL
DAGKFGSLEEFQKEFKDINREEQISRLHTMLAPHLLRRMKKDVMTELPPKKELILRVELC
SKQKEYYKAILTRNYQILTRQGGAQISLINVVMELRKLCCHPYMLQGVQPDVNDAKESYK
QLLESSGKLQLLDKMMVKLKEQRHRVLIYSQFQSMLDLLEDYCSYKHWQYERIDGKVGGA
ERQIRIDRFNVKNSSRFCFLLSTRAGGLGINLTTADTVIIYDR
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctcatttgggcttcgagcaagatcaaaacacagaccactttatactattgat
gagtcagatgatgattcagatgttttgcctagaaaacgtaagaagcctcaagaaaaaatt
gagaaaattgttagaagtgaaacaaaagacaattcatgtcaagcttgtggagaaagtgga
aatcttctgagctgtgaaacatgcacctattctttccatccgagctgtatactctcacca
cttaagagcccctttcgagacaattggaggtgccctgagtgtgttagcccactgaatgat
attgataagatattagactgtgagatgcgatccaccgtagctggtgaaagtgatgccaca
aaattggattcaaagcaaaattttgtcaaacaatatcttgttaagtggaagggactatca
tatttgcactgcacatgggtgcctgaggaagagtttctgaaagctttcaaggatcatcca
ggtctaaaggccaaagtaaacaatttccatcgtaatatgacctcagccgatatacctaat
gaagattttgtagccattcggcctgaatggactacggttgatcgaatacttgcatgcagg
ggtcacgaagataagaaggaatatcttgtgaagtggaaagagcttccatacgatgaatgc
tactgggagcttgagacagatgtctctgcatttcaaacagaaatagaaagatacaataca
tttcagtctagatcaaggaaaattttctctagcaagaaaaaaggaagtgttaaggatggt
gctaaattgaatacgcagaagaaagaatttcaacagtatgaacatagccctcaatttctt
acagggggtacactgcattcatatcaacttgaaggattgaacttcttaagattctcttgg
tccaaacaaactcatgttatacttgctgatgaaatgggacttggaaaaaccattcagagt
attgctttccttgcatccctttttgaagagaatgtttctccacatctggtggttgctcca
ctttcaacattgcgaaactgggaacgggaatttgcaacttgggcacctcaaatgaatgtt
gttatgtattttggatctgccaaaggtcgtgcttttattagagagcacgagttttacttt
ccaaagaatcaaaagaggatcaagaacaagaaatctagacagatagttgacgaaagcaaa
caagaaagaataaagtttgatgtacttttgacatcatatgagatgataaattctgataca
tcatcattgaaacctataaagtgggagtgcatgatagtagatgaaggtcatcgtcttaaa
aacaaggattctaaattgttttcttcattgcagcaatattccagcaaacatcgtgtgctt
ttgacaggaactcctcttcagaacaaattggatgaactttttatgctgatgcacttcctc
gatgctggaaagtttggaagtttagaggagttccagaaagagtttaaggatattaatcga
gaagagcaaatatcaagattgcatacaatgttggctccacatctccttagaagaatgaag
aaagatgtcatgacagaactacctccaaaaaaggaacttattttacgtgttgaattatgc
agcaaacaaaaagaatactacaaggcaattttaacccgtaattatcagatattaactcgc
caaggtggtgcacaaatttctcttatcaatgttgttatggaactgcgtaagctctgttgt
catccctatatgttacagggagttcaaccggatgttaacgatgcaaaagaatcatacaag
caattgcttgaatcatcagggaagctacagttgttggacaagatgatggtgaagcttaaa
gagcaacgacatagagtcctcatatattcccaatttcagagcatgctggatttgcttgaa
gattactgttcttacaagcattggcagtatgaaaggatagatgggaaggttggaggagct
gaaagacaaatacggatagatcgttttaatgttaaaaattcttcaagattttgttttctt
ctttctactagagctgggggattggggataaaccttacaacggctgacacagttattata
tatgacaggtga
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