Clavibacter capsici: AES38_10105
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Entry
AES38_10105 CDS
T05227
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ccap
Clavibacter capsici
Pathway
ccap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AES38_10105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccap03400
]
AES38_10105
Enzymes [BR:
ccap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AES38_10105
DNA repair and recombination proteins [BR:
ccap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AES38_10105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ALD13223
UniProt:
A0AA86GCT7
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Position
2142153..2144654
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AA seq
833 aa
AA seq
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MAGAKQQVEVEGRRITLTNLDKVLYPATGTTKGDVIAYYAAIAPHMLPHLRDRPVTRKRW
VDGVGTDDEPGKMFFQKDLDAHTPEWVQRRAIQHRDHANDYPLVADVATLTWLGQIAALE
LHVPQWRFGRTGDVRRPDRLVLDFDPGPGAGLPECVEVAGAARAILRDMGLEPYPVTSGS
KGIHLYAALDGSHDADAISEVAHELARALEADHPDLVVSDMRKALRHGKVLVDWSQNNPA
KTTVAPYSLRGRSRPTVAVPRTWRELASPTLRHLEMDEVVARMRRRQDPLAPVEEGHRES
LEPTPERLAGFARKEPADDRLATYRSKRDAAKTSEPVPAESPAPSEGRSFVIQEHHARAL
HWDFRLEHDGVLVSWALPKGVPTEHGTDHLAVQTEDHPVEYGAFEGTIPAGEYGGGEVTI
WDAGTYELEKWRDGKEVIATLHGRGSGTGIDGPRRYALIHTGGHGKADANWLIHLMEPAD
APAKAHARPARPAALERAGGRTRVGARRRGGAASAPAPMLATAATGAGLDPDEEWAVEMK
WDGYRAIAVVADGRATITSRNGVDLTPAFPELAELPDSLDVDAAVLDGEIVVLGDGGRPD
FGLLQTRLGLTGEKDVARARKAAPVHLMLFDALAIGDRVLVEEPYRERRAALLDAVRSPG
RGRIQVPPAFDGDLDGALATSRELGLEGVVAKRVDAPYESGRRSSAWLKVKHHRAQEVVV
GGWRPGSGSRASGVGSLLVGVPGPDGLDYAGRVGTGFTERDLADALRRFRPLARKTSPFA
DVPAADARDAHWITPRLVGEVEFAEWTSTGRLRQASWRGWRHDKSPDEVVRED
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcgaagcagcaggtggaggtcgaggggcggcggatcacgctgacgaacctc
gacaaggtgctgtacccggccaccggcacgaccaagggcgacgtgatcgcgtactacgcg
gccatcgcgccgcacatgctgccgcacctccgcgaccggccggtgacccgcaagcgctgg
gtcgacggcgtcgggaccgatgacgagccggggaagatgttcttccagaaggacctcgac
gcccacacgccggagtgggtccagcggcgggcgatccagcaccgcgaccacgcgaacgac
taccccctcgtcgccgacgtcgcgacgctcacctggctcgggcagatcgcggcgctcgag
ctgcacgtgccgcagtggcgcttcggccgcacgggcgacgtgcgtcgccccgaccgcctc
gtgctcgacttcgacccgggacccggcgccggacttcccgagtgcgtcgaggtcgcgggg
gcggcccgcgcgatcctccgcgacatgggcctcgagccctacccggtgacgagcggatcc
aaggggatccacctctacgcggccctcgacggcagccacgacgcggacgccatctccgag
gtggcgcacgagctcgcccgcgcgctcgaggccgaccaccccgacctcgtcgtgagcgac
atgaggaaggcgttgcggcacggcaaggtgctcgtcgactggagccagaacaacccggcc
aagacgacggtggcgccgtactcgctgcgcggccgctcccggccgaccgtcgcggtgccg
cgcacgtggcgcgagctcgcgtcgccgaccctccggcacctggagatggacgaggtcgtc
gcgcggatgcggaggcgccaggatccgctcgcccccgtcgaggagggacaccgcgagagc
ctggagccgacgcccgagcggctcgcgggcttcgcacggaaggagccggccgacgaccgc
ctcgccacctaccgctcgaagcgcgacgcggccaagacgagcgagcccgtgcccgcggag
tccccggcgccgtcggagggccgctccttcgtgatccaggagcaccacgcccgcgcgctg
cactgggacttccggctggagcacgacggcgtgctcgtgagctgggccctccccaagggc
gtgcccaccgagcacggcacggaccacctcgcggtgcagaccgaggaccacccggtcgag
tacggcgcgttcgagggcacgatccccgcgggcgagtacggcggcggcgaggtgacgatc
tgggacgcgggcacctacgagctggagaagtggcgcgacggcaaggaggtcatcgcgacg
ctgcacggtcgaggctccggcaccggcatcgacgggccccggcggtacgcgctcatccac
acgggcgggcacggcaaggccgacgcgaactggctgatccacctgatggagcccgccgac
gcccccgcgaaggcgcacgcgaggcccgcacgccccgccgccctggagagggcgggaggg
cgcacgcgcgtcggcgcgcgacggaggggcggcgccgcatccgcccccgcgcccatgctc
gcgacggccgcgaccggcgccggcctcgaccccgacgaggagtgggccgtcgagatgaag
tgggacggctaccgcgcgatcgccgtcgtcgccgacggccgcgcgaccatcacgagccgc
aacggcgtcgacctcacgcccgccttccccgagctcgccgagctgcccgactccctcgac
gtcgacgcggccgtgctcgacggcgagatcgtcgtgctcggcgacggcggccgcccggac
ttcggcctcctgcagacgcgcctcgggctcaccggcgagaaggacgtcgcgcgcgcccgg
aaggccgcgcccgtgcacctcatgctcttcgacgccctcgcgatcggcgaccgcgtgctc
gtggaggagccgtaccgggagcgccgggccgcgctcctcgacgccgtccgctcgccgggc
cgcggccggatccaggtcccgcccgccttcgacggcgacctcgacggggcgctcgccacc
agccgcgagctcggcctcgagggcgtcgtcgccaagcgcgtcgacgcgccctacgagtcg
ggccgccgatccagcgcgtggctgaaggtcaagcaccaccgggcgcaggaggtcgtggtc
ggcggctggcgacccggatccggcagccgcgcatccggcgtcggctcgctgctcgtcggc
gtccccggccccgacggcctggattacgcgggccgcgtcggcacgggcttcaccgagcgc
gacctcgccgacgccctccgccgcttccgcccgctcgcgcggaagacgagccccttcgcc
gacgtgccggccgccgacgcccgcgacgcgcactggatcacgccccgcctcgtcggcgag
gtcgagttcgccgagtggacctccacggggcgcctccgccaggcgtcctggcgcggctgg
cggcacgacaagtcgcccgacgaggtcgtgcgcgaggactga
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