Cyprinus carpio (common carp): 109054984
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Entry
109054984 CDS
T05134
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109054984 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109054984 (ddx42)
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109054984 (ddx42)
Spliceosome [BR:
ccar03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109054984 (ddx42)
Complex B
109054984 (ddx42)
Complex C
U2 SnRNP specific factors
109054984 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
109054984
NCBI-ProteinID:
XP_018927758
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All DBs
Position
6:10670008..10678168
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AA seq
745 aa
AA seq
DB search
MNWNKGGPSGKRGFGFGGFSLASGKKEEPSLPQKAHSSFGASGPSGGYGKNQQLSSFYKI
GTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRKQFQSGGGGGGSDSEDDPLDAFM
AEVEDQAAKDMKKLEEKEKEKKLAKGIRDDIEEEDDQEAYFRYMAENPTAGLTQEEDEEE
VDYDSDGNPIAPTTKKIIMPLPPIDHSEIDYPPFEKNFFIEHEELSSLTEAGVVELRKKL
NLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALGGRDMIGIAKT
GSGKTAAFIWPMLVHIMDQKELEQGEGPIAVIVCPTRELCQQIHSECKRFGKVYGLRSVA
VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEY
QVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQIVEVLQ
TYINPWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSESTERSSGGGSALGNYEAYKPST
GAMGDRMSALKQAFQAQYKNHFVAASGVPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPD
GTHLSYLPSSSSSFSSMPPPPPALSSGTKMSGFSSAGSLSSVSDSYSSSSSKEGSRSDRN
ADDRGHRGDSHYHHSDRHSAGDRDRYAERDRHSDRDRHSDSRNGEGSHRDREGRSERDGG
ERSGTHKDSFAVPDPPKRKKSRWDN
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggaggtccgagtggcaagcgaggctttggattcgggggattctct
cttgcgagcgggaagaaagaggaacctagtcttccccagaaggcccactcttcatttgga
gcttcaggtccatcaggtggatacggcaagaatcagcagctttcttctttttacaaaata
ggaacaaaacgagccaatttcgacgaggagaatgcttattttgaggatgatgaagaggag
tctagcagtacagatctgccgtatatacccgccgagaactctcccactagaaagcagttc
cagtctggaggaggaggaggcggctccgacagcgaggatgaccctcttgatgcttttatg
gctgaggtggaggaccaagcagcaaaagacatgaagaaactcgaagaaaaggaaaaagag
aaaaagttagccaagggtatacgggatgacatcgaagaggaggatgaccaagaagcatat
tttcgttacatggcggaaaacccaacagctgggctgacccaagaggaagatgaggaagaa
gtggactatgacagcgatggaaaccccattgctcctactaccaaaaagattatcatgcca
ctgcccccaatagaccactcagagattgactatcctccctttgagaagaacttctttatt
gagcatgaggaactcagcagtctgactgaggccggagtggtggaactgagaaagaagctc
aatctgaaggtttcaggtgcagcacctcctaaaccagccactagttttgcccacttcgga
tttgatgagcagctcatgcaccagatccgtaaatctgagtacactcaacccacacccatc
cagtgccagggtgttccgatagctttgggaggcagagacatgattggcattgccaaaact
ggcagtggaaagactgcagctttcatttggccaatgctggtgcacatcatggaccagaag
gagctggagcagggagagggacccattgctgtgatcgtctgccccaccagagagctctgt
caacagatccattctgaatgcaagcgctttgggaaggtgtatggcctccgctcggtggca
gtatatggaggcggcagcatgtgggaacaagccaaagctctacaggaaggagccgaaatt
gttgtctgcaccccaggtcgcctgatcgatcatgtgaagaagaaggctacatctctgcag
cgagtgacctacctggtgtttgatgaagctgatcgcatgtttgatatgggatttgaatac
caagtgagatccattgccagccatgtcagacctgatcgacagactttattattcagtgca
acatttcggaagaaaattgaaaagctggcgagagatattttggtcgaccccattcgtgtc
gttcagggagacataggagaggctaatgaagatgtcactcagatagtggaggtgctgcag
acttatataaatccctggttcaggaagtcccgcttcaagggagggaaagggaagaagcta
aatattggaggtggaggcctgggttacagagagagaccaggccttggatctgaatccact
gagcgcagtagtggtggtggttctgctcttggtaactatgaagcctacaaaccctccact
ggggccatgggagaccgtatgtctgctctgaagcaagcatttcaggctcagtataaaaac
cactttgtggcagcgtctggtgttcctccaaaactcaccacaaagtccagcagctcctct
ggatggaccagtgcgggaagtctaagttctttgccttcaggagcaccagaggggcctgac
ggaacccacctgtcctacttgccatcgtcttcttcctcgttttcctccatgccgccgccg
ccccctgccctcagctcgggtaccaaaatgagcggcttcagcagtgcaggctccttgagc
tcagtttcagactcttactctagctcttcttcaaaagagggatcccgtagcgataggaat
gctgacgacaggggtcatcgtggagatagtcattatcatcacagtgacaggcatagtgcc
ggagaccgtgatcgctatgcagaaagagaccggcatagtgacagagatcgtcacagcgat
agccgaaatggtgaagggagccatagggacagagagggacggtcagaaagagatggcggc
gagaggtcagggactcataaagacagctttgcagttcctgatccccccaaacgtaagaaa
agcagatgggacaattaa
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