Cyprinus carpio (common carp): 109089299
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Entry
109089299 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03030
DNA replication
ccar03410
Base excision repair
ccar03420
Nucleotide excision repair
ccar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109089299
03410 Base excision repair
109089299
03420 Nucleotide excision repair
109089299
03430 Mismatch repair
109089299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccar03032
]
109089299
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109089299
DNA replication proteins [BR:
ccar03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109089299
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109089299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
AAA_22
AAA_5
AAA_7
AAA_30
Rad17
AAA_33
RuvB_N
AAA_16
AAA_14
AAA_17
nSTAND3
RNA_helicase
AAA_18
NTPase_1
DNA_pol3_delta
AAA_19
Motif
Other DBs
NCBI-GeneID:
109089299
NCBI-ProteinID:
XP_018959000
LinkDB
All DBs
Position
2:complement(3170653..3187154)
Genome browser
AA seq
1031 aa
AA seq
DB search
MDIRRFFASTKPAAPKPSNGSTSTDGEQKKKQKSKTKVTSPTSDEKPSGKRKKRVIIDSD
SEEEKKKEKKTKKGTKETDAATVKKHPVTYVSDSDSDDTFMTLKKTKPKENGTAKGKKES
DSGKAKQVKVSSSKSPNTISKGGVKSSQPTVSPKIGPTPTKQTPTSVMAFFGSSSVQRSD
KKXVASTSTKRKAPTQETEELLSDEAIAKELQMDEDMELEKQIHDDEEFARTLAKLDEAP
LPKRLARVDSVSPSKSSSHAISSDTKPKKDPSPKKSPVKTSSKLAQMKRRQEEVEEQREK
DRGEKQIKISPKKEPISPTSSERAATPKTSVSTGMTKSRNFSTPKSDSAPNKISPTKPES
ELLDLIRTKPGKKSKYEIAAEAENKSSKTRTPDSRGKPTPPSKKATPQGPSPNKRSPSKG
KSKPGSASKSGTLGASRSEVKKSLSFDQSKGASPVSHSTPESEGSSLLWVDKYRPRSLKN
LIGQQGDQSCANKLLRWLQNWHKHHSGNTKAPSKFGKVGSKDDGSGFKAALLSGPPGVGK
TTTAALVCEELGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYSGASQTVSSKHVLI
MDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVE
QIKGAVMSIAFKEGLKIPPPALNEVILASNQDIRQVLHNLSMWSAKDKVMTYDQAKADAN
NAKKDMKLGPFDVCRKVFASGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAG
GNLKNHLVLLSKTADSICDGDLVDKQIRSRQAWSLLPTQAIYASVLPGELMRGYMSQFPT
FPSWLGKFSSTGKHSRIIQELASHMSLKTLSSKEAINLDYLPYFRSAILEPLQSQGSEGA
SQSVKLMDDYDIIKEDVDNIMEISMWGGQPDPYSKLDSKVKAAFTRAYNKESHLMPYSLQ
VVKKSRKGAIDPELIGELDSESQFQEEEEGDGVTADAMIKQKKSKPAKDVKQEKPGASGK
GKGRGKGKAMK
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaggttttttgcatccaccaaacctgcggcccccaaaccttccaacgga
agcaccagcactgatggagagcagaagaagaaacaaaaatcaaagactaaggtcacaagt
cccacatctgatgagaaaccatctggaaagcgaaagaaaagagtcataattgattcagac
tctgaggaagagaagaagaaggagaagaagaccaagaagggcactaaagagactgatgcc
gccacagtcaagaaacacccagtaacttatgtgtctgattctgattcggatgatacgttt
atgactctgaaaaagacgaaaccaaaagaaaacggaacagctaaaggcaagaaagaatca
gattcaggaaaagcaaaacaggtgaaagtctcatccagtaaatccccgaacacgatctca
aagggaggggtgaagagctctcagcctaccgtctccccaaagatcggtccaacgccaaca
aaacaaacacctacttcagtaatggccttctttggcagctcaagtgttcagaggtcagac
aagaaantggtggccagtaccagcactaagaggaaggcacccacacaggaaactgaggag
ctgctcagtgatgaagccattgcaaaagaacttcagatggatgaagacatggagttggaa
aagcagatccatgatgatgaggaatttgcaagaacattagccaaactggatgaagctccc
ttaccgaaaaggttggctcgggtggactctgtctccccctccaagagcagctctcatgca
atttcctcagacaccaaacccaaaaaggacccgtcccctaaaaagagtcctgtgaagacc
agctccaaactggctcagatgaaacgacgacaggaagaagtggaagagcaaagggaaaaa
gacaggggtgaaaagcagattaagatttctcctaagaaagagccaatctcaccaactagc
tcagagcgggcagctacgcccaaaactagtgtttccacgggaatgacaaaatccaggaat
ttttccacgcctaaaagtgacagtgcacccaataaaatctcaccaacaaaaccagagagt
gagttgttggacctcattagaaccaaaccaggcaagaagtctaaatatgagattgcagca
gaggcagagaataaatcctctaaaacaaggactccagactctagaggcaaacccactcct
ccatccaagaaggccacaccacaagggcccagccccaacaagagaagcccttcaaagggg
aagtctaagcctggctctgcttctaaatctggaacacttggggcctctcgttcagaggtc
aaaaagagtttgagctttgatcaatccaagggagcatcccctgtatcccactctacccct
gagagtgagggtagcagcctgttgtgggtggataagtaccgcccccgtagtctgaagaac
ctgattgggcagcagggggatcagagttgtgctaacaagcttctgcgttggttacagaac
tggcataaacatcacagcggcaatacaaaagcaccatccaaatttggaaaggttggaagt
aaagatgacggttcaggatttaaggctgcattgttatctgggcctcctggtgttgggaag
accactactgctgctctcgtctgtgaggagttgggttacagctacgtggagatgaatgca
agctgcacccgcagtaagaacagcttaaaggaagtgatcgcagaatcactcaacaacacc
agcattaagaacttctattccggtgcatctcagacagtgagcagtaaacatgtcctcata
atggatgaggtggacgggatggcaggaaatgaagacagaggaggaatacaggaaatgatt
ggtttgataaaacagtcaaagattcccattatctgcatgtgtaatgaccgcaatcatcag
aagatccgctcgctggctaactactgctacgacctgcggtttcagagaccccgtgttgag
cagatcaagggggctgtgatgtctatagctttcaaagagggtctgaagatcccaccccca
gcacttaatgaagtcattctggcatccaatcaggatattcggcaggtactgcataatctg
agcatgtggtctgctaaagacaaagtcatgacctatgaccaggccaaagctgatgccaac
aatgctaagaaggacatgaaactgggtccatttgatgtgtgtcggaaggtgtttgcttca
ggagaggaaaccgcccacatgtctttgattgacaaatcagaccttttcttccatgattac
tctttagcaccactatttgttcaagaaaactacctgcatgtccgaccagctgctgcaggg
ggaaatctgaagaatcatttggtgttgttgagtaaaacagcagacagtatttgcgatgga
gatttagtggacaaacagatccgctccagacaggcatggtctctgcttcccacacaggcg
atttatgcgagcgtgttgccgggggagctgatgcggggttatatgagtcagtttccgacc
tttccaagctggttgggcaagttttcatcaactggcaaacacagccgcatcatacaagag
cttgcctcacacatgagcctaaaaacgttaagtagtaaggaagccataaatctggattac
ttgccgtattttcgctcggcaatattagagcctcttcagtcgcaaggttcagagggagcc
agtcagagtgtgaagctcatggatgattacgacatcatcaaagaggatgttgataacata
atggagatcagcatgtggggtggacagccggatccttactctaaactagactccaaggtg
aaagctgcatttacaagagcctacaataaggaatcccatcttatgccttactccttacaa
gtggtgaagaaaagccgtaaaggtgctattgaccctgagcttataggagagcttgacagt
gaatctcagttccaggaagaggaagaaggtgatggggttacagcagatgcaatgatcaag
cagaagaaatctaaaccagcaaaagacgtcaagcaagagaaaccaggggcttctgggaag
gggaaaggcaggggtaaaggaaaggccatgaagtga
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integrated database retrieval system
