Cynara cardunculus var. scolymus (artichoke): 112508840
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Entry
112508840 CDS
T05604
Name
(RefSeq) histone deacetylase 19
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
ccav03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112508840
03083 Polycomb repressive complex
112508840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112508840
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
112508840
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
112508840
HDAC complexes
Sin3A-HDAC complex
112508840
BRAF-HDAC complex
112508840
REST complex
112508840
SHIP complex
112508840
MiDAC complex
112508840
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
112508840
Heterochromatin formation proteins
Other heterochromatin formation proteins
112508840
Chromatin remodeling factors
NuRD complex
112508840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
112508840
NCBI-ProteinID:
XP_024969405
LinkDB
All DBs
Position
LG 3:complement(704440..713674)
Genome browser
AA seq
494 aa
AA seq
DB search
METGGNSLASGPDGVKRKVYYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMH
VVKPVPARDKDLCRFHADDYVSFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHEYCDIAINWAGGLHHAKKCEASGFCYVNDIVLSILELLKVHQRVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKYYSLNVPLDDGI
DDESYQSLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGVELEDKMPQHEYFEYFGPDYTLHVAPSNMEN
KNSRQLLDEIRSKLLDNLSKLQHAPSVQFQERPPDTEFPEADEDQEDDDRRSDDSDVDEN
NEGKPFLGRVKRELHDMESKDMDDGKEGERAREMDASFAEISIKASNSGSAPADIKLEQG
NSNKPDQPPAEMNL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggaaactggaggcaattccctagcatctgggccagatggagtgaagagaaaagtttac
tacttttatgacccagaggtcggcaattattattatgggcaagggcatccaatgaagcca
cacagaattcgcatgacacatgctctgttagctcactatggtttgctgcaaaacatgcat
gttgtgaaacctgttcctgctagagataaggatctttgcaggtttcacgctgatgactat
gtttcttttctaaggggcatcaccccagaaacacagcaagatcagttgaggcagctaaaa
aggtttaacgttggtgaagactgccctgtgttcgatggtctctactccttttgtcagact
tatgcaggaggttctgttggaggggcagtgaagttgaaccatgagtattgtgatattgca
ataaactgggcaggtgggctgcatcatgcgaaaaaatgcgaggcttctggtttctgctat
gttaatgatattgtgttgtcaattctggaacttctgaaagtgcaccagcgtgtcctatat
gtagatatcgacattcatcacggtgatggtgtggaggaggctttctacacaactgacagg
gtcatgactgtttctttccataaatttggagattatttcccgggtacaggggatatacga
gatattggatattcaaagggaaaatattactctctgaatgttcccctggatgatggcata
gacgatgaaagctaccaatcattgtttaagcccataattggcaaagtgatggaagtgttc
agacctggtgcggttgtcttacagtgtggtgcagattccttatcaggagatcggctgggc
tgttttaatctctcgattaagggtcatgctgaatgtgtgagatacatgagatctttcaat
gtgcccttactcttgcttggtgggggaggctatacaatacgtaatgttgctcgctgctgg
tgctatgagacaggagttgcacttggggttgagctagaagataagatgcctcagcacgag
tattttgagtactttggtcctgactatactcttcatgttgctccaagtaacatggaaaat
aagaattctcgtcagctgttggatgaaatacgatcaaagcttcttgataatctctctaaa
cttcagcatgcaccaagtgtgcaattccaggagcggccgcctgatacagaattccctgag
gcggatgaagatcaagaggatgatgatcgaagatcagatgattctgatgttgatgaaaat
aacgagggtaagccttttcttggccgtgtgaagagggaacttcatgatatggagtctaag
gacatggatgacggaaaagaaggtgaacgtgctagagagatggatgcatcctttgctgag
atatccataaaggcttcaaattccgggtcggcacctgcagacatcaaactagaacaagga
aactcgaacaaacccgatcagccgcctgccgagatgaacttatag
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