KEGG   Cynara cardunculus var. scolymus (artichoke): 112508840
Entry
112508840         CDS       T05604                                 
Name
(RefSeq) histone deacetylase 19
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082  ATP-dependent chromatin remodeling
ccav03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112508840
   03083 Polycomb repressive complex
    112508840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccav03036]
    112508840
Enzymes [BR:ccav01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     112508840
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     112508840
   HDAC complexes
    Sin3A-HDAC complex
     112508840
    BRAF-HDAC complex
     112508840
    REST complex
     112508840
    SHIP complex
     112508840
    MiDAC complex
     112508840
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     112508840
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112508840
  Chromatin remodeling factors
   NuRD complex
    112508840
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 112508840
NCBI-ProteinID: XP_024969405
LinkDB
Position
LG 3:complement(704440..713674)
AA seq 494 aa
METGGNSLASGPDGVKRKVYYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMH
VVKPVPARDKDLCRFHADDYVSFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHEYCDIAINWAGGLHHAKKCEASGFCYVNDIVLSILELLKVHQRVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKYYSLNVPLDDGI
DDESYQSLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGVELEDKMPQHEYFEYFGPDYTLHVAPSNMEN
KNSRQLLDEIRSKLLDNLSKLQHAPSVQFQERPPDTEFPEADEDQEDDDRRSDDSDVDEN
NEGKPFLGRVKRELHDMESKDMDDGKEGERAREMDASFAEISIKASNSGSAPADIKLEQG
NSNKPDQPPAEMNL
NT seq 1485 nt   +upstreamnt  +downstreamnt
atggaaactggaggcaattccctagcatctgggccagatggagtgaagagaaaagtttac
tacttttatgacccagaggtcggcaattattattatgggcaagggcatccaatgaagcca
cacagaattcgcatgacacatgctctgttagctcactatggtttgctgcaaaacatgcat
gttgtgaaacctgttcctgctagagataaggatctttgcaggtttcacgctgatgactat
gtttcttttctaaggggcatcaccccagaaacacagcaagatcagttgaggcagctaaaa
aggtttaacgttggtgaagactgccctgtgttcgatggtctctactccttttgtcagact
tatgcaggaggttctgttggaggggcagtgaagttgaaccatgagtattgtgatattgca
ataaactgggcaggtgggctgcatcatgcgaaaaaatgcgaggcttctggtttctgctat
gttaatgatattgtgttgtcaattctggaacttctgaaagtgcaccagcgtgtcctatat
gtagatatcgacattcatcacggtgatggtgtggaggaggctttctacacaactgacagg
gtcatgactgtttctttccataaatttggagattatttcccgggtacaggggatatacga
gatattggatattcaaagggaaaatattactctctgaatgttcccctggatgatggcata
gacgatgaaagctaccaatcattgtttaagcccataattggcaaagtgatggaagtgttc
agacctggtgcggttgtcttacagtgtggtgcagattccttatcaggagatcggctgggc
tgttttaatctctcgattaagggtcatgctgaatgtgtgagatacatgagatctttcaat
gtgcccttactcttgcttggtgggggaggctatacaatacgtaatgttgctcgctgctgg
tgctatgagacaggagttgcacttggggttgagctagaagataagatgcctcagcacgag
tattttgagtactttggtcctgactatactcttcatgttgctccaagtaacatggaaaat
aagaattctcgtcagctgttggatgaaatacgatcaaagcttcttgataatctctctaaa
cttcagcatgcaccaagtgtgcaattccaggagcggccgcctgatacagaattccctgag
gcggatgaagatcaagaggatgatgatcgaagatcagatgattctgatgttgatgaaaat
aacgagggtaagccttttcttggccgtgtgaagagggaacttcatgatatggagtctaag
gacatggatgacggaaaagaaggtgaacgtgctagagagatggatgcatcctttgctgag
atatccataaaggcttcaaattccgggtcggcacctgcagacatcaaactagaacaagga
aactcgaacaaacccgatcagccgcctgccgagatgaacttatag

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