Cynara cardunculus var. scolymus (artichoke): 112511277
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Entry
112511277 CDS
T05604
Name
(RefSeq) protein PAF1 homolog isoform X1
KO
K15174
RNA polymerase II-associated factor 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112511277
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
112511277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Paf1
Imm3
Motif
Other DBs
NCBI-GeneID:
112511277
NCBI-ProteinID:
XP_024972609
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All DBs
Position
LG 4:complement(19378463..19390627)
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AA seq
690 aa
AA seq
DB search
MASYRPFPQPPPPPQSNFGRPPPPLPNHTTLPPPPLAPPPQPRGNQYSQNWGYPNSSFQQ
GSYAPPPGTSVPNQQQQQFASYPPPPPPESSYPPPPPPPSQPAPRGQMYFPSSQHAQLHN
QPIQPLLQPPPPPPPPSSPPSSSAPPPPPPPLQPPSPPPPPTTVPTKDQAKENRHEGYKR
PSNDPEASKWRNPSHSHHAGPSRQHSKPSSLPPVPARKSNGGPPGRVETEEERRLFKKRE
MEKQRQEEKHRQQLKESQNKVLQKTQILSSGIKPHGSVSGSHMGDRRANPFLSGERIENR
LKKPTTFLCKLKFRDELPDSTSQPKLLSIRRDKYRAARYSVTSLEKVHKPQLYVEPDLGI
PLDLLDLSVYNAPKDEILHVAPEDERLLQEDVSVTPIKKDGLKRKERPTDKGVSWLVKTQ
YISPLSMEATRQSLTEKQAKDLRERRGNNILDNLNSRERKIQDIQASFEACKSHPVHATN
KKLQPVEILPLFPDFERWDDQFVVATFDGPPTVDSESYNKMDKSVRDAHEAQAIMKSFVA
STSDSAKPDKFLGYMVPSVGELSKDISDESEDISYTWVREYRWDVRGEDVDDPTSFLVAF
DESEARYNPLPTKLILRKKRSREGKTGDEVEHFPVPASITVRQRSNVLVKMKESEGGSRG
RSSNGRRHDGNMEMEDMDLQSSGAEYDMSD
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtacagaccattccctcaaccaccaccaccacctcaatcaaattttggccgg
ccaccacctccgctgcccaatcacactactcttccacctccaccacttgcccctccgccc
caaccaagaggaaatcagtattctcagaattggggctatcccaattcgagttttcaacag
ggtagttatgcgcctccaccaggaacctctgttcccaatcaacaacaacaacaatttgca
tcatatccgcccccaccaccaccggagtcttcatatccaccaccaccaccgcccccttcc
cagcctgcaccacggggacaaatgtatttcccatcttctcagcatgctcagttacataat
cagcctatacaaccactgctgcaaccgccaccaccaccacctccaccttcctctcctccg
agttcttcagcgcccccgcctcctcccccaccactacaaccaccatcgcctcctccacct
cctactaccgttcccacaaaagatcaagccaaggaaaacagacacgaaggttacaaaagg
ccttccaatgacccggaggcttctaaatggcgtaatccgtcgcattcccatcatgccggt
ccttctagacagcattctaagccatccagtttacctcctgtgccagcaagaaaatcgaat
ggcggtcctcctggcagggttgagactgaagaagagaggaggttgttcaagaagagagaa
atggaaaagcaaaggcaagaagagaaacataggcagcagttgaaggagtctcagaataaa
gtcctccaaaagacccaaattttatcttcagggatcaagccacatggttcagttagtggc
tcccatatgggtgataggagggctaacccatttttgagtggtgaaaggattgaaaatcga
ttgaagaagccgacaacctttctttgcaagctgaaattccgggatgagttaccggattcg
acatcccaaccaaagcttctgtctataaggagagacaaatatcgagctgctaggtattcc
gtcacttcattggagaaggtgcacaagcctcaattgtatgtcgagccagaccttgggata
ccgcttgacctacttgatctcagtgtatacaatgctcccaaagatgaaatactacatgtt
gctcctgaagatgagaggctgctgcaggaggatgtctctgtgaccccgataaaaaaagac
gggttaaagaggaaggaacgccctacggataaaggtgtttcttggctggtcaagacgcaa
tatatatctcctcttagcatggaggcaacaagacagtctttgactgaaaaacaagcaaaa
gatttacgggaaagacgcgggaacaacatactagataacctcaatagtagggaaaggaaa
attcaggacattcaggcttcatttgaggcttgcaagtcacatcctgttcatgcaactaac
aaaaaactacagcctgttgagattttgccattatttcctgattttgaacggtgggatgat
caatttgttgttgcgacctttgatggtcctcctaccgtagattcagaaagctacaataaa
atggacaaatccgttagagatgctcatgaagctcaggccattatgaaaagctttgtggca
agcacctcggactcggctaaacctgacaaatttttgggttacatggtaccttccgtcggt
gagctgtcaaaggatatatccgatgaaagtgaagatatttcttacacgtgggttcgtgaa
tatcgttgggatgtgcggggtgaggatgtggatgatcctacgagtttccttgttgcattt
gatgaatcagaggctcgttacaatccactgccaacaaagctgattctaaggaaaaagaga
tcgagggaaggaaaaacaggcgacgaggttgaacatttccctgtacctgcaagtatcacg
gtgaggcaaagatcaaatgtcttggttaagatgaaggaatccgaggggggttcgagaggg
agaagttcaaatggtagacgacatgatgggaatatggagatggaagatatggatcttcaa
tccagtggtgctgaatacgatatgtctgattga
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