Cynara cardunculus var. scolymus (artichoke): 112515879
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Entry
112515879 CDS
T05604
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
ccav03015
mRNA surveillance pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112515879
09122 Translation
03013 Nucleocytoplasmic transport
112515879
03015 mRNA surveillance pathway
112515879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112515879
03041 Spliceosome [BR:
ccav03041
]
112515879
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112515879
Spliceosome [BR:
ccav03041
]
Complex C
Other components
EJC/TREX
112515879
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
112515879
NCBI-ProteinID:
XP_024978599
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Position
LG 7:9481378..9488011
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AA seq
788 aa
AA seq
DB search
MSESKKTSSPYVVLDNRSLDQWKVTELKEELKRRKLMTKGLKDDLVRRLDEAVRSEVEEA
NQNHDIGVNDITQPEVPSDDATVETPVAEKTISIMDNSSANNESLKEEKITETFDKNVSL
EKDSLAEKMDSDGSLEKDGLVEKLDNNESSEKHNITENLDDKNRINRDVPVENDVLQLSA
KKLVTEGEHGIVSTGIEGFQVLQEVSAETSVLVSEGMVSEELGQQDLQNVEINHEGEVSN
LQPEDGESKPESQSSKEEVKPNSSHIGGQVVEVSLVKSDSISIDTMSITEKIELKDNVIA
DDVKLELDVKLEMVQPSSSKVVLDDAKTESVVVDEPHEETFTTEEKDVNNAESINICKKN
DSDDVGSPEKLNLDRSSGDDSMEEDALESKQIDSKFNSQDLGDISKKTELPLVKEDEPVD
VMVEDTPAAKNTKSTKDNSDPSVVPIKRKLRADQEAVTNVEVVKRQRRWNSESLKVPEQH
STNPSLSTTPKDAFQASMKHSFSRSDSSVSHEEPKERVVPPSSKPPTTSLRIDRFLRPFT
LKAVQELLGKTGTVVSFWMDHIKTHCYVTYSSVEEAVETRNAVYNLQWPVNGGRLLLAEF
VDPSEVKSRTEAPLPSPRTPVTPTLPQPTPAAAQPPQQLPPPPPLPLPPPPPLSLPPQSR
EPTLPPPPPLHEPPIMTLDDLFRKTRATPRIYYLPLSDEQVAAKVKGQGKTAKQSAGVAF
RKEQRWLSRSSFRDRFRCFPRTLHLFKNPNTRKLRSRIGTNICSIYFLDIETLFLKTLYP
CLRLLLYA
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaagcaaaaagacgtcttcaccatatgttgtccttgacaatcgttctcttgat
cagtggaaagtaactgagctgaaagaagaactcaagagacggaaactgatgaccaaagga
ttgaaagatgatctggttaggaggttggatgaagctgttcgttctgaagttgaagaggct
aaccaaaatcatgacattggtgtcaatgatattacccagcctgaggttccatctgatgat
gccacagtagagacacctgttgcagagaaaacaatcagcattatggacaatagtagtgcc
aacaatgagagcttaaaggaagaaaaaattacagagacgtttgataaaaatgtgagctta
gagaaagatagcttggctgagaaaatggatagtgatgggagcttagagaaagatggtttg
gttgagaaattggataataacgagagctcagagaaacataacataacagagaatttggat
gataaaaacaggattaatagggatgtgcctgtagaaaatgatgttttgcagctatcagcc
aaaaagttggttacagaaggggaacatggcattgtttctactggcattgaaggctttcag
gtacttcaagaggtttctgcggaaacttctgttttggtcagtgagggtatggtatctgaa
gagctgggacagcaggatttgcaaaatgttgaaatcaaccatgaaggagaggtctcaaac
ttgcagccagaggatggagagtcaaagcctgaatcacaatcctcaaaggaagaagtcaag
cctaattcatctcatataggcggccaggtagtcgaggtcagcctagtaaaatctgattct
atttctattgatactatgtcaattactgaaaagattgaactaaaggataacgtaattgct
gatgatgtcaaattagaacttgacgttaagcttgagatggtgcagccatcatccagcaaa
gttgtcctggatgatgccaaaacagaatcagttgtagttgatgagccacatgaggaaaca
tttaccaccgaagagaaagatgtcaataatgctgaaagtatcaatatatgcaagaaaaat
gatagtgacgatgtgggttctccagagaagttaaatttggatcgaagttctggtgatgat
tcgatggaggaggatgcattagagagtaaacagattgattcgaagtttaattctcaagat
ttaggtgatataagtaagaaaacggagctgcctcttgtaaaggaggatgagcctgttgat
gttatggtcgaggatacacctgctgccaagaataccaaaagtactaaagataatagtgat
ccttctgtcgtgcccataaaaagaaagcttcgtgcagaccaagaagcagtgacaaacgtc
gaggtagtaaagaggcagcgcaggtggaattctgaaagccttaaggtccctgaacagcat
agcactaatccttctctatctactacacctaaggatgcattccaggcttctatgaagcac
agcttttcgagatctgattcttcagttagccacgaggagccaaaggaacgtgttgttccc
ccatcgtcaaagcctccaactacttctctcagaattgatcgttttcttcgtccattcact
ttaaaggctgtgcaagaacttcttggaaaaactggtacagtcgttagtttctggatggat
catatcaaaactcactgttatgttacttattcatcagttgaagaagctgtagaaactcga
aatgctgtttacaacctccaatggccggtgaatggaggacgccttctcctagccgagttt
gtggatccatcagaggtcaaaagtcgaactgaagctccgctaccatctccacgaactcct
gtcacacctaccctaccacaaccaactccagctgccgcacaaccaccacagcagcttcct
cctccacccccactcccccttccacctccaccaccactctctcttccaccacaatcaaga
gaacccaccctccccccaccgcccccactccatgaaccacccatcatgacattggacgat
ctgttcagaaagacaagagcaactcctcgaatttattacctgccgttgtccgatgaacaa
gttgcagcgaaagtgaagggacaggggaaaactgcaaagcagtctgcaggtgttgcgttt
aggaaggagcagcggtggctctcgaggagctcgtttcgtgatagatttagatgttttcca
aggactctccatttgtttaagaacccaaacacccgaaagttgagatctcggatcggaact
aatatttgctcaatttattttctggacatcgaaaccttgtttctcaaaacgttgtaccca
tgtttgagattacttttgtatgcttaa
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