Cynara cardunculus var. scolymus (artichoke): 112518071
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Entry
112518071 CDS
T05604
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like
KO
K12897
transformer-2 protein
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112518071
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccav01009
]
112518071
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112518071
Protein phosphatases and associated proteins [BR:
ccav01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112518071
Spliceosome [BR:
ccav03041
]
Common components
Common spliceosomal components
SR proteins
112518071
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
CoV_nucleocap
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
112518071
NCBI-ProteinID:
XP_024981406
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Position
LG 9:16343546..16350289
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AA seq
255 aa
AA seq
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MADSTRRRYSGSPPYEAPSRSRSRSRSRSWSRPRGRPVSRSRSRSRGRDEAINPGNTLHV
TGLSTRVTQEQLEEHFSKEGKVSNCFLVVEPRSRISRGFAFITMETLEDANRCIKHLNQS
VLEHRQITVERSRRKRPRTPTPGHYLGLKNTRDTGYRGDRGRPRGGSSRDDYGYRRPARR
SPPYRGGRDYSPRRSPPPYRGGRDYSPRRSPPPYRGGRDYSPRRSPPDYGGRSRRERSPP
PYSPYRSPERNYGRR
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atggctgactcaactcgacgaagatattctggctctcctccctatgaagcaccatcaagg
tccagatctcgatccagatcgagatcctggtcaaggccaagaggtaggcctgtatctaga
tcaagatcaagaagtcgtggcagggatgaggctataaatcccggaaacacacttcatgta
accggcctatcgacacgtgttacacaggagcagctcgaagaacatttttcaaaggaggga
aaggtgtctaactgttttctggtggtggagcctcgttcacgcatctcccgtggctttgct
tttataacaatggaaaccctcgaggatgccaatcgctgcataaagcaccttaatcagtcg
gttctcgaacaccgccaaataactgtggaaagatcacgaaggaaacgccccaggacaccg
acacctggccattacctcggcctgaaaaacactagggataccgggtatcgtggtgacaga
ggcaggcctcgtggtggctctagccgtgatgactatggataccggaggcctgcaaggcgg
tcgccaccatatagaggtggtcgtgattactccccaaggaggtcaccgccaccatacaga
ggtggccgtgattactctccaaggaggtcaccaccaccatatagaggcggtcgtgattac
tctcctaggcggtcaccgcctgattatggtggcagatcaagaagggagaggtctcctcct
ccatattcgccttacaggagtccagaaaggaactacggtcgccgctag
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