Cynara cardunculus var. scolymus (artichoke): 112519398
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Entry
112519398 CDS
T05604
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112519398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112519398
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112519398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
NBCH_WD40
WD40_like
PROPPIN
WDR54
DUF6617
Motif
Other DBs
NCBI-GeneID:
112519398
NCBI-ProteinID:
XP_024983257
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Position
LG 10:complement(13201871..13217385)
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AA seq
758 aa
AA seq
DB search
MMYNDPQQQQQPQQQQQQPIYQQHPPPPPPQQQMMQQHQHHQHHHQQQPPPHQFHQPQQM
GEFQRGPPPQQHQQQPQPPPPQMMRQPSASSTTLGGSQEYHQQLAHPPFDAHADNFAAKR
MRKIGQRRAVDYTSTVVRYMQTRLWQRDAWDRTVLQPTPAAAIDMLPTVAYSDNPSTSFA
AKFVHTSLNKNRCSINRVLWTPTGRRLITGSHSGEFTLWNGQSFNFEMILQAHDQPIRSM
VWSYNDNWMVTGDDGGSIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV
KVWDFARCQEERSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGRELCSFHGHK
NTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELQSFRGHRKDVTALAWHPFHEEYFVS
GSFDGSIFHWLVGHETPQIEIPNAHDSCVWDLAWHPIGYLLCSGSSDNTTKFWCRNRPGD
PARDKFNMGHNQGYNDQNSALAGRMPVNFPGPEPPTTPGPFAGLNRNEGTIPGIGVAMPL
SLDASTQGEQKPPISSSMPLGAPPLPPGPHPSLFAVNQQQNYQQNAQQAQHHHQGHQQQM
TSLQPPNMQQLQHQTHMPLLPHPHLPRPPPQLPPHNMPSSMQGSMPMHGQMGTMNQMGPP
MQQGHFMGMNPMHSGPGGAPPGGIPNMQGPSSASGNQMYPSGGAFNRPQGAQMPPMPGLG
PYQPGNPSGTGMGPNFSMPSGIVPPLPPGPPPHGQTPQ
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacaatgatcctcaacagcagcagcaaccacagcagcagcagcaacagccaata
tatcagcaacaccctcctccaccaccgccacaacagcaaatgatgcagcaacatcaacat
caccagcaccaccaccaacagcagccaccaccgcatcaatttcaccagccgcagcaaatg
ggagagtttcagaggggtccgccgccgcagcagcatcaacaacaaccacagccaccgccg
ccgcagatgatgcgtcagccttctgcttcttccaccactcttggtggttctcaagagtat
caccaacagcttgctcatcctcctttcgacgcccatgccgacaattttgctgccaaaaga
atgagaaaaattggacagcgaagagctgttgattatacgagcactgttgtgcgatatatg
cagacccgtttatggcaacgagatgcatgggacaggacagtattacaaccgactcctgct
gcagcaatcgatatgttaccaacggttgcctattcagataatccatccaccagctttgct
gcaaagttcgtgcatacatcactaaacaaaaaccgctgttcaatcaatcgtgtactgtgg
actcctactggtaggcgtcttataactggttcacacagtggggagttcacattatggaat
ggtcaatctttcaatttcgaaatgattctgcaggctcatgatcaaccaatcaggtctatg
gtatggagttacaatgacaattggatggtcactggtgatgatggaggctctataaagtac
tggcaaaacaacatgaacaacgtgaaagctaataaatctgcacacaaggaatctgtccgt
gacctaagcttttgtagaacagatttaaagttctgttcctgctctgatgacacaactgtt
aaagtttgggactttgctcgttgccaggaggagcgttctttatccggccatggttgggat
gtgaagagtgttgactggcaccctaccaagtctttactagtttcaggtgggaaagacaat
cttgtgaagctttgggatgctaaatctgggagagagctatgttcatttcatgggcacaag
aatactgttctttgcgtcaaatggaatcaaaatggtaattgggtgttaactgcatctaag
gatcaaattatcaagctatatgacattagagctatgaaagaactacaatcatttcgtggt
catcggaaggacgtcactgcactggcttggcatccgttccatgaggagtattttgttagc
gggagttttgatggatcaatcttccactggctagtagggcatgaaactccacaaatcgaa
attccaaatgcacatgatagctgtgtctgggaccttgcatggcatcccattggctatctt
ctttgcagtggcagcagcgacaacacaacaaaattttggtgcagaaataggcctggggat
ccagctcgtgataaattcaacatgggccataatcaagggtacaacgaccaaaattctgct
cttgctggccgcatgcctgttaattttcctggacctgagccaccaactactcctggacca
tttgctggattgaatcggaatgaaggtactattcctgggatcggagtggcaatgcctttg
tctctagatgcatcaacacagggagagcaaaaaccacccatatcctcgtcaatgccatta
ggggctcctcctttaccacccggtccacatccatctctttttgcagttaatcagcagcaa
aattatcaacagaatgctcagcaagcccagcaccaccaccaagggcatcaacagcaaatg
acatccctgcagccaccaaatatgcaacagttacaacatcaaactcatatgccacttctg
ccacaccctcatttgcctcggcctccaccccagttacctcctcataacatgccatcttca
atgcaaggatctatgcccatgcatggtcaaatgggcacaatgaatcagatgggaccgcct
atgcagcaaggccattttatgggcatgaatcctatgcattcgggacctggaggtgcacca
ccaggtggcattccaaatatgcagggcccatcaagtgcgagtgggaaccagatgtatcca
tcagggggtgcatttaatcgacctcaaggtgcgcagatgcccccaatgccaggactaggt
ccttatcagccagggaatccaagtggtactggcatgggacctaatttcagtatgccttct
ggtattgttccaccgctgcctcctggccccccaccacatggacaaacacctcagtag
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