Cynara cardunculus var. scolymus (artichoke): 112520489
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Entry
112520489 CDS
T05604
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112520489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112520489
03009 Ribosome biogenesis [BR:
ccav03009
]
112520489
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112520489
Spliceosome [BR:
ccav03041
]
Complex A
U1 snRNP components
U1 related factors
112520489
Complex B
112520489
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Helicases
112520489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
112520489
NCBI-ProteinID:
XP_024984690
LinkDB
All DBs
Position
LG 10:complement(28903304..28913569)
Genome browser
AA seq
1060 aa
AA seq
DB search
MAAEGGPDALGPRYAPADPTLPEPWKGLVDGSTGVLYYWNPETNVTQYEKPNASLPPLPT
GPPPVPSAPKLAPIPGVRTGQPNGVPGQQAHQMTHNTQQPGPQVTPQSQQHAEQVPQVAQ
QNSSQLXQGGXQXGSQMGPGMQQLGQQMTQHIRPQMGPNQHTFSTVEQQMPPQQGVQIPQ
TYQGGPLGQQQGYQFTHQQSHYMGYQQNIPQAGQPNIPQHTQHPEQFPQQEQKAAFLQRE
DTDFQQGKQVGFSPSQIHQGGVPPVQSLPPEGKSSIQPGQTTPYGGSLLSVQQPSSFGQL
QYSGINHQQHAPRFQSQMGQAQMHGQQPNVPPVGFKMGFEETQPGRGGNEHYINANNDGP
NVATHQPKLAAIPMARNQPEMRFGAPPPQNNNMPGPASHNIYGHATGGPPYANNTMIMQN
PAAMTSRDAMNMSSVDIYRQKHDVTATGDNVPAPFMSFESTGFPPEILREIHAAGFASPT
PIQAQTWPIALQNRDIVAIAKTGSGKTLGYLIPAFMHLRFCRNNPQNGPTVVVLAPTREL
ATQIQDEAIKFGRSSRVSCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKRVDF
RQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQ
VNIGNADELAANKSITQYVEVVPHMEKQRRVEQILRSQERGSKIIIFCSTKKLCDQLTRN
IGRNFGAAAIHGDKSQGERDWVLNQFRSGNSPILVATDVAARGLDIKDVRVVINYDFPNG
VEDYVHRIGRTGRAGAKGMAYTFFSEQDWKYAADLIKVLEGADQPVPAEVREIAVRGGPG
FGKERGGMSRFDSGGRGGMRDGGFGGRGGDGRFGGRGGDMRDGRFGGRGGELREGGFGGR
GGGGFGGRSGQRDEGFGSRGGMRDGNYGGRGGGWERGXNDRFMDSRGRGRGRGRFDNRRD
GDRGRGRSYSRSPDRVRTWGRSRSRSRSYSRSRSWSRSRSRSRSRSRSRSRSYSRSPVRR
ERRRESKFDQIEVELPKVAEAEIVGEIGGSIPVPDAIDGA
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgagggaggtccggacgctctgggacctcgttatgctccagctgatccaaca
ttgcctgaaccttggaaaggcttggttgacgggagcaccggtgtgctgtattattggaac
cctgaaaccaatgtcacccaatacgagaaacctaatgcttcgctgcctccactgccaaca
ggcccaccacctgtgccctctgcacctaagctggctccaatacctggtgtaaggactggg
cagccgaacggagttcctggtcaacaggcacatcaaatgacacataacacacagcaacca
gggccgcaagttactccacaatcacaacagcatgctgaacaggtaccacaggttgctcaa
caaaatagctctcaattacyacaaggtggacracaaytwggttcacaaatgggacctggc
atgcagcagttggggcagcaaatgacacagcacatcaggcctcaaatgggaccaaaccag
cacacattttcaactgtggaacaacaaatgccaccccagcaaggagttcaaatacctcaa
acttaccagggtggaccgttaggrcarcaacagggctaccaatttacacatcaacagtcg
cactacatgggatatcagcagaacatccctcaggcagggcagcctaatataccacagcat
acwcagcatcctgaacagtttcctcaacaagagcaaaaggctgcattcttgcagagagag
gatactgattttcagcaaggaaaacaggttgggttctctccatcccagatccatcaaggt
ggggtgccacctgttcaaagtctgcctccagagggtaaatccagtattcaacctggacaa
accactccatatggtggctctctgctcagtgtgcaacaaccttcctcttttggtcagtta
cagtatagcggcatcaaccaccagcaacatgctccaaggttccaaagccaaatgggtcaa
gctcagatgcatggccagcagcccaatgttccaccagtaggattcaagatgggttttgaa
gaaactcaacctggaagaggtgggaatgagcactatattaatgctaataatgatgggccg
aatgttgctactcatcaacctaagcttgctgcaattcctatggcaagaaatcagccggag
atgagatttggggctcctccacctcaaaataataatatgccagggccagcctcacataac
atctatggacatgctactggtggtccaccatatgcgaataacaccatgataatgcaaaat
cctgcagcaatgacttctcgagacgctatgaatatgtcctctgttgatatttaccgtcag
aagcatgacgtaacagcaacgggtgataatgttccagctccattcatgtcatttgagtcc
acaggctttcccccagagatattgagagagatacacgctgctggwttcgcttctcccaca
cctattcaggctcaaacatggcctattgccttgcaaaatagggatatagtggcaattgcg
aagacaggttccggtaaaacattggggtatctgatccctgctttcatgcatctcagattt
tgccgcaacaatcctcagaatggaccaacagttgttgttttagctcccacccgggagctt
gctactcagatacaagacgaggccataaagtttggccggtcttctagggtctcttgcaca
tgtttgtatggtggagctcccaagggtcctcaattgaaggaattggaaagaggagcagat
attgttgtagctactcctggtcgacttaatgacatccttgaaatgaaaagagttgatttc
cgtcaggtttctcttcttgtccttgatgaggcagacaggatgcttgatatgggttttgaa
cctcaaataaggaagatcgtcaatgaaatacctccgcgcaggcaaactctgatgtataca
gccacttggccgaaggaagtgagaaaaatagctggagaccttcttgtcaatcctgttcag
gttaatattggyaatgcggatgagcttgctgcaaacaagtctattacccagtatgttgaa
gttgttcctcacatggagaagcagagacgtgtggagcagattcttcgatcccaagaacgg
ggttccaaaataataattttctgttcaacaaaaaaactatgtgaccagcttacacgtaat
attggtcgcaactttggtgctgcagcaattcatggagacaaatctcagggtgagagagac
tgggttctgaatcagtttcgttctggcaattcgccgatattagttgccacagatgttgcc
gcacggggacttgacattaaggatgtaagggtagtgatcaattatgattttccaaatggt
gttgaggactatgtgcatcgaatcgggcgaactgggagggcaggggcaaaaggtatggcc
tacacctttttttcagaacaagactggaaatatgcagctgatctaatcaaggttctggag
ggggccgatcagcctgtacctgctgaggtgcgagagattgcggtacgtggcgggcctggg
tttggaaaggaaaggggtggaatgagccgttttgattctggtggtcgtggtggcatgagg
gatggtggttttggtgggcgtggtggggatggcaggtttggtggtcgtggtggtgacatg
agggatggcagatttggtggtcgtggtggtgagttgagggaaggaggttttggtggtcgg
ggtggtggtgggtttggagggagaagcggtcaaagggatgagggttttggaagtcgtggt
gggatgagggatggcaactatggtggtcgtggtggtggttgggaacgtggccytaatgat
agattcatggattcccgtggcagaggcagggggcgagggagatttgataacaggagagat
ggggaccgtggtaggggaagaagttatagccgtagtcctgatagggttcgaacgtggggc
cgtagccgaagcaggagtaggagttacagcaggagccgtagttggtcaagaagccgaagc
cgaagccgaagccgaagccgaagccgtagccgcagctacagtcgtagccctgtaaggcgt
gagagacggcgtgaatcaaaatttgatcagatagaagtggagttgccgaaagttgcagaa
gcagagattgtgggtgagataggtggttcgattcctgtcccagatgccattgatggagcc
taa
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