Cynara cardunculus var. scolymus (artichoke): 112520633
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Entry
112520633 CDS
T05604
Name
(RefSeq) serine/arginine-rich SC35-like splicing factor SCL33
KO
K12900
serine/arginine-rich splicing factor 10
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112520633
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccav01009
]
112520633
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112520633
Protein phosphatases and associated proteins [BR:
ccav01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112520633
Spliceosome [BR:
ccav03041
]
Common components
Common spliceosomal components
SR proteins
112520633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
112520633
NCBI-ProteinID:
XP_024984806
LinkDB
All DBs
Position
LG 11:complement(4268668..4271574)
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AA seq
215 aa
AA seq
DB search
MRGRSYSYSPSPPRYRSRSYRSPSPRGRHGGRARDLPTSLLVRNLRHGCRPEDLRGPFRE
FGPLKDVYLPRDYHTGELRGFGFVQYLDPDDAAEAKYQMDGQILLGRELTVVFAEENRKK
PSEMRARESFRGHSYDRRGSSSMRYSRSPRRGRSYDRSPSYYSPSPRRGRYSRSISPEER
RYRERMRERSYSRSSYGSMSRSRSPVRSSRSPERY
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcagaagttacagctacagcccttcaccaccaagataccgtagcagaagctat
cgaagtcctagcccaaggggtcgacatgggggtcgtgctagagatcttcctaccagcctc
ttggttcgcaatcttcgccatggttgcaggccagaagatctccgtggaccatttcgagag
tttggcccgctgaaggatgtttacttaccgcgggactatcatactggagagctgcgtggt
ttcggttttgttcaatatcttgatcctgatgatgctgccgaggccaaatatcagatggat
ggtcaaattcttcttggtagagagctgacagtcgtgtttgcggaggaaaacaggaagaag
ccttcagaaatgagagcaagagaaagttttcggggacactcatatgatcgtagaggatca
tcttccatgcgttactctcgttcaccccgccgtggaagatcatacgatcgcagtccaagt
tactattctccttctcctaggcggggccgctactctaggtcaatttcaccggaagagcga
aggtacagagagagaatgagagaaaggtcttattcgaggagttcgtatggatccatgagt
aggagccgtagcccagtcaggagcagccggagtccagaacgttattag
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