Cynara cardunculus var. scolymus (artichoke): 112526480
Help
Entry
112526480 CDS
T05604
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ccav04812
]
112526480
Cytoskeleton proteins [BR:
ccav04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
112526480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
ANAPC4_WD40
NBCH_WD40
eIF2A
PROPPIN
Motif
Other DBs
NCBI-GeneID:
112526480
NCBI-ProteinID:
XP_024992532
LinkDB
All DBs
Position
LG 14:complement(800904..817346)
Genome browser
AA seq
1053 aa
AA seq
DB search
MAKRGYKLQEFVAHSANVNCIKIGKKTHRNFITGGDDEKVNLWSIGKPSAITSLSGHTSP
IESVAFDSTEVFVAAGASSGVIKLWDLEEIKVVRTLNGHRSYCTAVEFHPFGEFFASGSM
DTNLKIWDIRKKGCIHTYKGHRRAVSTIRFSPDGRWVVSGGLDNVVKIWDLTAGKLLHEF
KFHEGHIRSMEFHPLEFLLATGSSDRTVKFWDLETFELIGSTRPEATGVRSITFHPDGRT
LFCGLDSSLKVYSWEPVVCHDAVDMGWSTLGDLCIDDGKLLGCSYYQNSVAVWVADTSHI
EQHGHNILAEDAHVQPKINLREGLTERVGNPRRPTNTMSPDDDPKDIKNIYVDTAGVTPV
ASRKTGSLPTVVNLPDPKEIDDLSTRKQVPASKIIGQADGNSFFMPVIVPHDNSAKDSAK
SRTESIVHEQDTAAALKPPHRCRPSTTKLDIEGLSVAVESGLKSGTDTAAATNFQKRLVA
DAAAKDSFKEKAPTSTGVVKEFQKASSPSILPQENRDGSVDSNEESKSVKYVNGVAVVHG
RTRSLVERFEKREKLNTDECQTPDLAPHISSNTDKPALMVKPTLNVVPCAIPEAKTSPVC
AKTPDVVPFEEPKAKTSRMQVKIPDVVPRKETEPKTSQMPVKPREEPELKTSQMPVKAPD
VVPREEPEPKTSQMPVKTPNVVPHEEPEPKTSQIPVNPREEPELKTSQMPVKAPDVVTSQ
MPVKAPDVVPCPVPEAKTFTVPEKRPNVVSIAATEAKSSSTVQKPDSGPNIKSEEANSSP
ALVIQRPRTAPSMLPEKGKASPMQRSASTRRLFPDKVRSSPMMVARRSTASSRIIPERTK
TSPMLVVQRHDTPNRMIPEKAKSSPLLDDSPQTTGRGLTSKKEDDVADELMLNHDAFLSS
LRSRLTKLQVVRHFWERNDARGAINALRKLPDHAVHADVVNVLTDRMEFFTLDLFASLLP
VLLDLLDSNTERHISVSLELLLKLVAVFGPVVSSTISAPPTVGVDLHAEKRLESCNQCHI
QLQKINKCLPAIIRRGGLPARCAQELNVILQQS
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacgaggatataaattacaggaatttgtggcccattctgcaaatgtgaactgt
ataaaaattgggaagaagacacatcgaaacttcattacaggtggtgatgatgaaaaagta
aatctttggtcaattgggaagccatcggctataacgagcctaagcggtcacacaagccct
attgaatctgttgcttttgactcgacagaagttttcgtggctgctggagcttcttctggc
gtgataaaactttgggatctggaagagataaaggtggttcgtacacttaatggacaccga
tcctattgcactgctgttgaattccatccctttggtgagttttttgcatcgggttccatg
gacactaatttaaagatatgggatatccgaaagaaagggtgcattcatacatataaagga
cataggcgagcagttagtaccatcagatttagtcctgatggtcgttgggtggtatcagga
ggacttgataatgttgtaaagatatgggacttaacagctggaaagcttttacatgagttc
aagtttcatgaagggcacattagatcaatggagtttcatcctcttgagtttcttctagcg
acaggttcatcagacagaactgtaaaattttgggacttagagacctttgaattgattgga
tcaactcgaccagaggcaacaggtgtacgatcaattacctttcacccagatgggagaact
ctgttttgtgggttggacagcagtttaaaggtctattcatgggagcctgtcgtttgtcat
gatgctgttgatatgggatggtcaacattgggtgacctctgcatcgacgatggaaagctt
ttgggatgctcatattatcagaactctgttgcagtttgggtggcggatacttcgcatatt
gaacagcatggacataacatcttagctgaggacgcccatgtgcagccaaaaattaatctc
cgggaaggtttaacagagagagttgggaatcccagaaggcccaccaataccatgtctcca
gatgatgatccaaaggatataaagaatatatacgtggacactgcaggcgtgactcctgtg
gcttcaagaaaaactgggtctttaccaacggttgtgaacttaccagaccccaaagagatc
gatgatttgagtacccgtaaacaagttcctgcatccaaaattattgggcaggccgatggt
aattccttcttcatgcctgttattgtgcctcatgacaattctgcaaaagactccgccaag
tctaggacagaatcaattgtccatgaacaggataccgctgctgcacttaagccacctcat
aggtgcaggccatcaactaccaaattagatatagaagggctatcagtagctgtagaatct
ggattgaaaagtggaacagatactgctgcagctacaaactttcagaaaaggcttgtagca
gatgctgctgctaaagattctttcaaggagaaagctccaacctctacaggtgttgtgaaa
gagtttcaaaaggcttcatctccaagtatacttccacaggaaaaccgtgatgggtctgtt
gattcaaacgaggaatcaaaatctgttaaatatgttaatggagtcgcagttgtgcatgga
aggactcgcagtttggttgagagattcgaaaagagagaaaagctaaatacagatgaatgt
caaacgcctgatctagctcctcatatttcaagtaacacagataagcctgccctaatggta
aaaccgacacttaatgttgtcccttgtgcaatacctgaagctaaaacatctccggtgtgt
gcaaagacacctgacgtggtgccttttgaagaacctaaagctaaaacgtcccggatgcaa
gtaaagatacctgatgtggtgcctcgtaaagaaactgaacctaaaacatctcagatgccc
gtaaaacctcgtgaagaacctgaacttaaaacatcccagatgcccgtaaaagcacctgat
gtagtgcctcgtgaagaacctgaacctaaaacatcccagatgccagtaaaaacacctaat
gtagtgcctcatgaagaacctgaacctaaaacatctcagatacccgtaaatcctcgtgaa
gaacctgaacttaaaacatcccagatgcccgtaaaagcacctgatgtggtgacatcccag
atgcccgtaaaagcacctgatgtggtgccttgtccagtacctgaagctaaaacattcacc
gtgcctgaaaaaaggcctaatgtggtctccattgcagcaactgaagctaaatcatcctca
acagtacaaaaacctgattcgggcccaaacataaaatctgaggaagctaactcatcccct
gcattggttatacagagacctaggactgcccctagtatgttacctgagaaaggtaaggcc
tcacccatgcagagatctgcaagtactcgacgtctatttcctgataaagttagatcatct
ccaatgatggtagcacggagatctacagcttcctcgcgcataatacctgaaagaaccaag
acctcacccatgttggtagttcaaaggcatgatactcccaatcgcatgatacctgagaaa
gctaaatcatctccattgctggacgatagcccacagactactgggagaggtctgacatct
aagaaagaagatgatgtcgcggatgagttgatgctaaatcatgatgcctttttaagcagt
ctccggtcccggctgacaaagcttcaggtggtacggcatttttgggagcgtaatgatgca
aggggtgctattaatgccttgcggaagttgccagatcatgctgtgcacgcagatgtggtc
aatgttctgacggatagaatggagtttttcactttagatctctttgctagcttgttgccc
gtgcttttggatttactggatagcaacacagagaggcatataagtgtatcactagaattg
ttattgaagcttgtggcggtctttgggcctgtagtaagttcgacaatttcagcacctcca
accgtgggcgttgatcttcatgcagagaaaaggcttgaaagctgcaatcaatgccatatt
cagctccagaagatcaacaaatgtctcccggctattataaggcggggcggtttgccggca
agatgtgctcaagaactaaacgttattctccaacaatcatga
DBGET
integrated database retrieval system
