Cynara cardunculus var. scolymus (artichoke): 112526916
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Entry
112526916 CDS
T05604
Name
(RefSeq) E3 ubiquitin-protein ligase TRAIP
KO
K11985
TRAF-interacting protein [EC:
2.3.2.27
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112526916
Enzymes [BR:
ccav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112526916
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112526916
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_UBOX
zf-rbx1
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_2
zf-RING_11
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
112526916
NCBI-ProteinID:
XP_024993125
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All DBs
Position
LG 14:complement(13351302..13359650)
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AA seq
557 aa
AA seq
DB search
MIGSANDPAQPFAKTICSICYEDLKPIVEDLQAISICGHVFHELCIQQWFEYCSKGKKKC
PICKQNCSASNVSRLYFQSVGDANEPKLSQKLQSHKEDPEELQIEVRRLEGKVKGLNSAL
GSREDDLKNISNELCVCKEQLKKESALKNEALEQTQTINRLLNMKTQELNKSDLERIKLQ
ERNMALAKELASFKLVSDLNLEEEEIVKLASLGTGAHSKESSDVLKKSLVVRNKMYKELI
AKCNTLGREEAHTRKKLEKAKEKVDKLKKRIQELETTNEIKDNEVLRALKASRTTKRSVS
VLNGVDSTSIDTCTPQDTIKEDVDQVAAMSIDPVHLRNTKRLKVSENIDGSNNKDGFSTP
DPGISSYILIDDDTPEVLKSHEFSSFDPVPEPTKSATNGGSCLSRPVHETRKQNGVSLNH
KDEDVLLLHEIPQNKSPVNITKEALPVVNSQEGDFCFSAGLLGPDGTKRHLGKWCKKGQN
KGFNASSIPTQVSGNLIAIGADGRGGTIKVLRSQNLSSQDCKESSVLAKNGKYGTKTSSL
QPRGCLQIDHFFRKAGQ
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgatcggatccgccaatgatccagcacaaccattcgccaaaaccatttgttcaatctgt
tacgaagatctcaaacccattgttgaagatcttcaagccatttcaatttgcggtcatgtc
ttccatgagctctgcatacaacagtggttcgagtactgttcgaaagggaagaagaaatgt
cccatatgcaagcaaaactgttcagcatccaacgtgagtcggctctatttccagtcagtt
ggtgatgctaatgagcctaagctctctcaaaaactgcaaagtcacaaagaagacccagag
gaactgcagatagaagtcaggagacttgagggtaaggtcaaggggctcaactcagcttta
ggaagtcgagaggatgatctcaaaaacattagtaatgagctttgtgtgtgcaaagagcag
ttgaagaaagaatcagcattgaaaaatgaagctttggagcaaacccagacaattaatcgt
ttacttaatatgaaaacacaggaacttaataaatcagatttggaacgcattaagttgcag
gagaggaatatggctttagccaaagaacttgcttcattcaagttggtctctgatttaaac
ttggaagaggaagagattgtgaaacttgcttctttgggtactggggcccacagtaaagag
agttctgatgtcttaaagaagtcattggttgttcgcaacaagatgtataaggaactaatt
gccaagtgcaacactcttggaagagaagaggcacacacccgtaaaaagcttgaaaaagct
aaagagaaagtagataaattgaagaaaagaatccaagaactggaaaccacaaatgaaatt
aaagacaatgaagtcttgagagcattaaaagcttcccggacaacaaagagatccgtgagt
gtactaaatggtgtggactccactagtatcgacacatgtacgccacaggatacaataaag
gaagacgtagatcaagttgcagccatgtctattgatcccgttcatcttagaaatacgaag
aggttaaaagtctcggagaatattgacggaagtaacaataaagatggtttcagcactccg
gacccggggataagttcctacattctaattgacgatgacacacccgaggttttaaaatca
catgaattttcgtcatttgatccagttcctgagcctactaaaagcgcaacaaatggtggt
tcctgtttatcgaggcctgtgcatgaaacaagaaaacaaaatggggtttctttgaaccat
aaagacgaggatgtgctgcttcttcacgagattccgcaaaataagtctccggttaacatc
acaaaagaagctttgccggttgttaattctcaagaaggagacttttgtttctcggccgga
ctgctaggtccagacggaactaaaaggcaccttggaaaatggtgcaaaaagggtcaaaac
aagggttttaatgcgtcttcgataccaacacaagtatcgggaaatcttattgctattgga
gccgatggtagaggtggtacaatcaaagttttaagatctcagaatctgtcctcacaggat
tgcaaagaatcttcagttttggccaaaaatggcaagtatggcaccaaaacaagtagtttg
caaccgcgtgggtgcttgcagatcgaccacttctttcgaaaagccggtcaatag
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