Ruminiclostridium cellulolyticum: Ccel_0365
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Entry
Ccel_0365 CDS
T00835
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cce
Ruminiclostridium cellulolyticum
Pathway
cce03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Ccel_0365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cce03400
]
Ccel_0365
Enzymes [BR:
cce01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Ccel_0365
DNA repair and recombination proteins [BR:
cce03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Ccel_0365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
ACL74750
UniProt:
B8I5T3
LinkDB
All DBs
Position
416583..417557
Genome browser
AA seq
324 aa
AA seq
DB search
MKWIIPMEPVICPNVKTGADYIHEIKWDGIRGMVYIQDGSVKIYTKKGKERTGFYPELDV
FKKGLGGQNAVFDGELVVLDENGVPSFYKSLIRERVRNSGKLKYYTNAYPVCYMVFDILQ
YGDNILVNMPLMDRKQILDKNLSSITGNDTGIFLTKVYPNGKDLFEKMKEQNMEGIVSKK
TDSLYIGGKKHEAWFKTKFIKKMLCVVGAIQWKSLQPNSLVLGIKPGDSQKLVYVGKASI
GLKQSDLMLIREYSGQLEQEQCPFTSEEMVQLDRTGEKFTWLYPALTCWISFLELTNDGH
LRHPKIEGFALLPAEEADGKVLTE
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggattataccaatggagccggtgatttgtcctaatgtcaagacaggtgctgac
tacatccatgagataaaatgggatggtataagaggaatggtttatattcaggatggaagt
gttaaaatttatacaaagaagggcaaagaaaggacaggtttttatccggaactggatgtt
tttaaaaagggtcttggaggacaaaatgccgtttttgacggggaacttgtagttttagat
gaaaacggagttccctctttctataaaagtttgatacgagaacgagttcgcaatagcgga
aaattgaaatattacacaaatgcataccccgtttgctatatggtatttgatattttgcag
tatggtgacaatatccttgtgaacatgcctttaatggatagaaaacaaatccttgacaaa
aatttaagttcgataacagggaatgataccggaatatttttaacaaaagtgtaccccaac
ggcaaagatctgtttgaaaaaatgaaagagcagaacatggaaggtattgtttccaaaaaa
actgacagcctgtatataggcggaaaaaaacacgaagcatggtttaaaacgaaatttata
aaaaaaatgctttgcgtagtaggcgcaatacaatggaagtcattgcagcctaattcgttg
gttcttggtattaagccgggagatagccaaaagcttgtatacgtgggtaaagcttcaata
ggactgaaacagtccgatttgatgcttataagggagtacagcgggcagcttgaacaggag
caatgcccctttacttcagaggaaatggttcagctggatagaaccggagaaaagtttaca
tggttatatcctgctcttacatgctggattagctttctcgaattgacaaatgacgggcat
ttgagacatccaaaaatagaaggatttgctttacttcctgcggaagaggcagacggaaag
gtgttgaccgaataa
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