Clostridium cellulosi: CCDG5_0620
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Entry
CCDG5_0620 CDS
T03806
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ccel
Clostridium cellulosi
Pathway
ccel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CCDG5_0620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccel03400
]
CCDG5_0620
Enzymes [BR:
ccel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CCDG5_0620
DNA repair and recombination proteins [BR:
ccel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CCDG5_0620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CDZ23751
UniProt:
A0A078KJE6
LinkDB
All DBs
Position
I:complement(665008..667488)
Genome browser
AA seq
826 aa
AA seq
DB search
MTEKLKEYNSKRNFEKTGEPRGIDVGEALKDTPEEGLRFAVQHHAARKDHYDLRLEWNGV
LLSWAVPKGPSYNPKDKRLAVKVEDHPLDYRSFEGTIPKGEYGGGTVMLWDEGFWEPQND
VDEGLSAGSLKFVLKGRRLKGKWVLIRLKAKEGEKKDNWIFLKEKDEYAQDDEGISEFDT
SIKTGRTMEEIGRGGDEKFIKNPISHADVQLAKLVNTVPEGQDWLFEVKYDGYRILAYLE
RNSARLITRNGNDYTGKFQSIADSLIEWANGRPMILDGEMVVTDPQGRTDFQALQSYLKN
RGGKNLVYIVFDLLALDGVDLRGRPLIERKETLENLLKTSPDNIYFSKHVRGNGKESFKA
ACELNLEGIVGKKADSVYSGTRNGDWIKLKCDKRQEFVIGGYTLSDKKAGGVSSLLLGFY
QENELIYAGRAGTGFSMREMRELESKFETLIRETSPFKQVPAPKKNEKVFWLEPELVAEI
KFTEWTEDNLLRQASFKGLRTDKDPKDIKIESTGDEMQTGENTKAEQPSETLAKAPTKAT
GNSIIIEGVKISNPDKVIFEDPVIKKVEVVQYYAAVAERMMPYVGNRILSIVRCPKGISS
SCFFKKHPGPGGQGTVTLPIETGSGETEDYFYIENMTGLVYEAQMGTLEFHIWGSRADNL
EKPDMMVFDLDPDEGMELEQVRQGVRDLKSILDQLSLISYLKTSGGKGYHIVVPFSPSAD
WNSFHDFAKRIAEVMEQKWPDRYTSNIRKDKRKNKIFIDWIRNARGATSIAPYSIRAKKG
APVSMPISWDELDTVSPNGIGMKDALERIKGSDPWENFYKVDQRLK
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaaacttaaggaatacaattcaaaaagaaactttgagaaaaccggggaaccc
agaggcattgacgtgggtgaggccctcaaagatacgccggaagaagggctgaggtttgcg
gttcaacaccatgctgcccgcaaagaccactatgacttgcgccttgagtggaatggggtt
ctattaagctgggcggtgcctaaagggccgtcgtataaccccaaagacaaaaggctcgct
gttaaggttgaagatcaccctttggattacaggagttttgaggggactataccaaagggc
gaatacggcggcggcaccgtaatgctctgggacgagggcttttgggaaccgcagaatgat
gtggatgaggggctgagcgcgggttccctcaaatttgttctcaaaggcaggcggctcaag
ggaaaatgggtcttgatccgtttgaaagcaaaagagggcgagaaaaaggacaactggatt
tttttaaaggaaaaggacgagtacgcacaggacgatgaaggcatatcagagtttgataca
agcatcaaaaccggccgcaccatggaggaaatcggcagaggaggagatgaaaagtttata
aaaaaccccataagccacgcagatgtgcagcttgcaaagcttgtaaacactgtccctgag
gggcaggattggctttttgaggttaaatacgatggctaccggattctggcttatttggag
cgaaacagtgcgcggctcataacaagaaacggcaacgactataccggcaagtttcagagt
atcgcggattcgctcatcgaatgggcaaacggaaggccgatgatactcgacggtgagatg
gtggtcaccgacccgcaaggaagaacggattttcaggccctgcaaagctatttaaaaaac
cggggcggcaagaaccttgtctatatcgtctttgaccttctggcgttggacggagtggac
ttgagaggacgccccctgattgagcgaaaagaaacccttgaaaaccttttgaaaacttca
ccagacaacatttatttcagcaagcatgtcaggggaaacggcaaagaaagcttcaaagcg
gcctgcgaactgaaccttgaggggatagtgggcaaaaaggcagattccgtttacagcggc
acaagaaacggagactggattaagctcaaatgcgacaaaaggcaggaattcgtgataggc
ggttatacgctttcagacaaaaaagcgggcggggtaagctcgctgctcttggggttttat
caagagaatgaattgatttacgccgggcgcgccggaacaggtttttctatgcgggagatg
cgggaacttgaaagtaagtttgagacattaataagggaaacgtctcctttcaagcaagta
cctgccccaaagaaaaatgaaaaagtattctggcttgagcctgaacttgtcgcggaaatc
aagtttactgagtggacagaagataatctcttgagacaggcaagtttcaagggcctgcgg
acagacaaagatccgaaagatataaaaatagaaagcacaggtgatgaaatgcagactggc
gagaatacaaaagcggaacaaccgtccgaaactttagcaaaggctccaacgaaagcaacc
ggaaacagcataatcatcgaaggggtcaagataagcaatccggacaaggtaatttttgag
gacccggtaatcaaaaaggttgaggtggttcagtattacgcagcggtcgctgaacgtatg
atgccgtatgtcggcaacaggattctcagcatcgtccgctgccccaaaggaatttcgtcc
tcctgtttctttaaaaagcaccccggtccaggcggtcaagggacagttacactgccgatc
gaaaccggcagcggggaaacagaagattatttttatatagaaaacatgaccggacttgtc
tacgaagcccagatgggcacgctggaatttcatatctggggcagccgcgcggacaatctg
gaaaaaccggatatgatggtgtttgacctcgaccccgacgaagggatggagctcgaacaa
gtacgtcagggcgtccgggatctaaaaagcattctcgaccaattgtcgctgatttcatat
ctcaagacaagcggcggcaaaggataccatattgtcgtacccttcagcccctcggcggac
tggaactcgttccacgattttgcaaagcggattgccgaggtcatggaacagaagtggccg
gaccgatacacaagcaatatcagaaaggataagcgcaaaaacaagattttcattgactgg
atacgaaacgcaagaggcgccacaagtatcgccccctattccataagggcgaaaaaaggc
gcgcctgtttcaatgcctatctcatgggatgagcttgatactgtgtcccccaacggcatt
ggcatgaaagatgctctggaaagaatcaaaggcagtgacccgtgggaaaatttctataaa
gtagatcagcggctaaaataa
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