Cellulosimicrobium cellulans: CBR64_00560
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Entry
CBR64_00560 CDS
T04858
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cceu
Cellulosimicrobium cellulans
Pathway
cceu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cceu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CBR64_00560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cceu03400
]
CBR64_00560
Enzymes [BR:
cceu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CBR64_00560
DNA repair and recombination proteins [BR:
cceu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CBR64_00560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ARU50225
UniProt:
A0A1Y0HSD3
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All DBs
Position
110487..113084
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AA seq
865 aa
AA seq
DB search
MATSSSRGAGETVSVGGHRLRLTNLDKVLYPATGTTKADVLAYLAAVADVMLPHCAHRPA
TRKRWPDGVDGQVFFQKNAGQGVPSWVRTRRIQHKSSANDYVLVDDLATLTWLGQTASLE
LHVPQWQFGRTGVHLNPDRLVLDLDPGPGAGLAECAEVARLARQILQGMGLDPLPVTSGS
KGIHLYAALDGKQDAAAVSAVAHELARYLEAEHPDLVVSDMKKSLRGGKVLVDWSQNNGN
KTTIAPYSLRGREHPTVAAPRTWEELDDPDLRHLDKDEVVERVRTIGDPLAALTLGHLSA
LEPTPERMATFERKGAATSGGDDEPGASDAERPDRLHRYRSMRDAARTPEPVPDEAPPAS
EGNGFVIQEHHARRLHWDFRLEHDGVLVSWALPRGEPTDPKKNHLAVQTEDHPLAYGSFE
GTIPKGEYGAGEVTIWDAGTYELEKWRDGKEVIVTLHGEQHGTRRLALIHTGGRDGRDGR
ETANWLIHLMAPRGGTPGRSSGRGQDAAVEASAPPATPPDHDHAEPAPARTDWRPMLASP
ASAGDLHDGDDWAFEMKWDGFRALAHVSRGGVRLVSRSGKDMTVTYPELQALAEQVPAEA
LPVVLDGEIVALDARGRPSFRRLQQRANIAKPGDVAAARRKVTVGLMVFDVLETAGRSLA
KRPYDERREILEDVLGDARAPVHVPPAFDGDLDAAMETSRRLGLEGVVAKRRDGTYSSGR
RSALWLKLKHAQSQEVVVVGWRPGHGDRAHLMGSLLLAVPDGDRLVYVGRVGSGFTDAER
HDLVTELGRLERTTPPATGVPRDDARDARWVSPRRVAEVVYAEWTGPGEGDDVPFGKLRH
PVWKGWRRDKAPADVVREEPATLDR
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcatcgagccgcggcgcgggcgagacggtgagcgtcggtggccaccgcctg
cggctcacgaacctcgacaaggtcctctaccccgccaccggcacgacgaaggcggacgtc
ctcgcctacctcgcggccgtcgccgacgtcatgctcccccactgcgcgcaccggcccgcg
acgcgcaagcgctggccggacggggtcgacgggcaggtgttcttccagaagaacgcgggg
cagggcgtgccgtcgtgggtgcgcacgcgccggatccagcacaagagcagcgccaacgac
tacgtgctcgtcgacgacctggccacgctcacgtggctcggccagacggcgtcgctcgag
ctgcacgtgccgcagtggcagttcggccgcaccggcgtccacctgaacccggaccggctc
gtgctcgacctggaccccgggccgggggccgggctggccgagtgcgcggaggtcgcgcgc
ctggcccggcagatcctgcagggcatggggctcgaccccctgcccgtgacgagcgggtcc
aaggggatccacctgtacgccgcgctcgacggcaagcaggacgccgcggccgtctccgcc
gtcgcgcacgagctcgcgcgctacctcgaggccgagcaccccgacctcgtcgtgagcgac
atgaagaagtcgctgcgcggcggcaaggtgctcgtcgactggagccagaacaacggcaac
aagacgaccatcgcgccgtactcgctgcgggggcgcgagcacccgaccgtcgccgcgccc
cgcacgtgggaggagctcgacgacccggacctgcgccacctcgacaaggacgaggtcgtc
gagcgcgtgcgcacgatcggcgacccgctcgccgctctcacgctcggccacctctccgcg
ctcgagcccacgcccgagcgcatggcgacgttcgagcgcaagggcgctgcgacgtcgggc
ggcgacgacgagcccggggcgagcgacgccgagcggcccgaccgcctgcaccgctaccgc
tcgatgcgcgacgccgcacggacgcccgagcccgtcccggacgaggcacccccggcgagc
gagggcaacggcttcgtcatccaggagcaccacgcccggcgcctgcactgggacttccgg
ctcgagcacgacggcgtcctcgtgagctgggcgctgccccgcggcgagccgacggacccg
aagaagaaccacctcgccgtccagaccgaggaccacccgctcgcgtacgggtcgttcgag
ggcacgatcccgaagggcgagtacggcgcgggcgaggtgacgatctgggacgccggcacg
tacgagctcgagaagtggcgggacggcaaggaggtcatcgtcaccctccacggcgagcag
cacggcacgcgccgcctcgcgctcatccacacgggcggccgcgacggtcgggacggccga
gagacagccaactggctcatccacctcatggccccgcgcggcggcaccccggggaggtcg
tcgggccgtggccaggacgcagcggtcgaggcgagcgccccacccgccaccccacccgac
cacgatcacgccgagccggccccagcgcggacggactggcgacccatgctcgcgtcgccc
gcgtcggcgggcgacctgcacgacggcgacgactgggcgttcgagatgaagtgggacggg
ttccgggcgctcgcgcacgtgtcccgaggcggggtgcggctcgtgagccgctcgggcaag
gacatgacggtgacgtacccggagctgcaggcgctcgccgagcaggtcccggccgaggcg
ctgcccgtcgtgctggacggcgagatcgtcgcgctcgacgcacgagggcgaccgagcttc
cggcggctgcagcagcgcgcgaacatcgccaagccgggggacgtcgcggcggcccggcgc
aaggtcacggtcggcctcatggtgttcgacgtcctggagaccgcgggccggtcgctcgcc
aaacgcccgtacgacgagcggcgcgagatcctcgaggacgtgctgggcgacgcgcgagcg
ccggtccacgtgccgcccgcgttcgacggcgacctcgacgcggcgatggagacgtcgcgg
cggctcggcctggagggggtcgtcgccaagcggcgcgacggcacgtactcgtcgggccgc
cgctcggcgctgtggctcaagctcaagcacgcgcagtcgcaggaggtggtcgtcgtcggg
tggcgcccgggtcacggcgaccgggcgcacctgatgggctcgctcctcctcgcggtgccc
gacggcgaccggctggtctacgtggggcgcgtcgggtcgggcttcacggacgcggagcgg
cacgacctcgtcacggagctcggccggctggagcgcacgacgccgcccgcgacgggcgtc
ccgcgcgacgacgcgcgcgacgcgcgctgggtgtcgccgcgccgggtcgccgaggtcgtc
tacgccgagtggacgggcccgggcgagggcgacgacgtcccgttcggcaagctgcggcac
cccgtgtggaaggggtggcggcgtgacaaggcgccggccgacgtcgtgcgcgaggagccc
gcgacgctcgaccggtga
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