Coregonus clupeaformis (lake whitefish): 121558627
Help
Entry
121558627 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase DTX4-like
KO
K06058
deltex [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121558627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121558627
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121558627
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121558627
BRITE hierarchy
Motif
Pfam:
DTC
WWE
zf-C3HC4
zf-RING_2
zf-RING_11
zf-RING_UBOX
zf-rbx1
zf-ANAPC11
zf-UDP
zf-RING_5
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
121558627
NCBI-ProteinID:
XP_045079159
LinkDB
All DBs
Position
10:2819..20424
Genome browser
AA seq
711 aa
AA seq
DB search
MATMLLASAVVVWEWLNEHGRWRPYSPAVSHHIEAVIRSDPRGGSVVLGQVDNRLSPYIL
DLQSMHQFRQDTGMIRPVRRSFYDPTSAPGQGWLWEWENDAGSWTQYDMEVGIAIQEARD
RQQPWLDLAPLGFCYLVDLRGMTQINRQTQRQRRIQRRSDMAYPLVSGPVPRNGGGGSGP
TGALLGVGVSGINGGVVYPSGGLATMQSLAGQPCTCQQCMLVFSVKQSTVRSSTHKLGHR
PSKPQSKPPSPKSATLGRGQLRSSPARSTYSKTLPHGLSISRNQSSPRRNAALFARSLSL
LSAQTGTLSLSNRPPPPSLPPPQPPSSNQGRRLSAPPSPSTPSQPVPTATLVTPATTVTS
PPSPVPSPSPRPMAPQRSAACSAPLPQRSSLAGLSRPALQRIAMAQSRALIASGVPTVPV
KNLNGNSPVHPALAGITGILMSAAGFPVCLTRPPKLVLHPPPVSKRDIKPVPGLAHCCRK
TSKKQARKGKTTEEVVKQYLQKVRIPPEEDCTICMEALGGPSGYKGGDFIGRLAQCGHQY
HLQCLVAMYNNGNKDGSLQCPTCKTIYGVKTGNQPPGKMEYHVIPHSLPGHPDCKTIRVI
YNIPPGIQGPEHPNPGKPFTARGFPRHCYLPDSEKGRTVLRLLLTAWDRRLVFSVGTSST
TGESDTVIWNEVHHKTEFGSNLTGHGYPDPSHLDNVLDELKAQGITEEEEQ
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatgctccttgcgtccgctgtggtcgtgtgggaatggctcaacgaacacggg
cggtggcggccctacagcccggccgtctcccaccacatcgaggcggtgatacgaagcgat
ccccgtggtgggagcgtcgtgctaggccaagtcgacaaccgcctctcgccctacatccta
gacctgcagtcgatgcaccagttcaggcaggacacaggtatgatccggccggtgcgccgt
agcttctacgaccccacgtcggcgccgggccagggttggctgtgggagtgggagaacgac
gcgggctcctggacccagtacgacatggaggttggcatcgccatccaggaggcccgggac
cgccagcagccctggctggaccttgcgccgctgggcttctgctacctggtggacctgcgg
ggcatgacccagatcaacaggcagacccagagacaacgcaggatacagcggaggtccgac
atggcttacccactggtgtccggacccgtacccaggaacggaggtggaggatcgggtccg
acgggagcattactgggtgttggggtgtcgggcatcaacggaggcgtggtgtacccaagc
ggcgggctggcgaccatgcagtccctcgccgggcagccgtgcacctgccagcagtgcatg
ctggtctttagtgtgaagcagagtactgtgaggtcatcgacgcacaagttgggccaccgg
ccgagtaaacctcagagtaaacctcccagccccaaatctgccaccctggggcggggccaa
ctcaggagctcccccgctagatctacctactccaaaaccttacctcacggactctccata
tcccggaaccagtcctcaccacgacggaatgccgccctcttcgcccgctccctctccctc
ctcagtgcccaaacgggcaccctctccctctccaaccgaccccctcctccctccctcccg
ccccctcagccgccctcctccaatcagggccgccgtctgtccgcgccgccctctccctcc
acaccgagtcaaccggtgcccactgccacgctcgtcaccccggcgaccaccgtgacgtca
ccgccctcgcccgtgccgtctccgtcgccgcggcccatggcgccccagcgctcggcagcg
tgctctgcccccctgccccagcggtccagtctggctgggctcagccggcccgccctgcag
cgcatcgccatggcccagtcacgagccctcatcgcctctggtgtgccaactgtcccagtg
aagaacctcaatggaaacagcccggtccacccagcgctggccggtatcacagggatcctg
atgagcgctgcggggttccctgtgtgtctcacccgcccccccaaactggtgctgcacccc
ccgcccgtcagcaagagggacatcaagcctgtccccggcctggctcactgctgccgcaag
acctctaagaaacaggcccgcaaagggaagacaacagaggaggtggtgaagcagtatctt
cagaaagtcaggataccaccagaggaggactgtaccatatgtatggaggccctcgggggg
ccgtcaggctacaagggtggtgacttcataggtcgcctggcccagtgtgggcatcagtac
cacctccagtgtctggtggccatgtacaacaacggcaacaaagatggcagcctgcagtgc
cctacctgcaaaaccatctacggcgtgaagacgggcaatcagccgcccggcaagatggag
taccatgtcatcccccactcgctgcccggccaccccgactgcaagaccatccgcgtcatc
tacaacatcccgccaggcatccagggcccagagcaccccaacccaggcaagccctttaca
gccagagggttcccccgccactgctacctcccagacagcgagaagggacgcacggttctc
agactcctgctgaccgcgtgggaccggcgcctggtcttctcggtgggcacgtccagcacc
acgggcgagtcggacacggtcatctggaacgaggtgcaccacaagactgagttcggctcc
aaccttacgggccacggctaccccgaccccagccacctagacaacgtcctggatgaactg
aaagcacagggcatcaccgaggaagaggagcaatga
DBGET
integrated database retrieval system
