KEGG   Coregonus clupeaformis (lake whitefish): 121584766
Entry
121584766         CDS       T08357                                 
Symbol
sf3a1
Name
(RefSeq) splicing factor 3A subunit 1 isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121584766 (sf3a1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cclu03041]
    121584766 (sf3a1)
Spliceosome [BR:cclu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    121584766 (sf3a1)
 Complex B
    121584766 (sf3a1)
 Complex C
   U2 SnRNP specific factors
    121584766 (sf3a1)
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 121584766
NCBI-ProteinID: XP_041756801
LinkDB
Position
16:39554155..39580226
AA seq 787 aa
MPPGPVQIVQPELNNRADEPTEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEA
RIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKGQEPSAAVPKVMQQQALQNSQQLP
QKVQAQVIHETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKE
QRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLIKLKRESENPREVLDQVRYRVEW
AKFQERERKKEEEEREKERVSYAQIDWHDFVVVETVDFQPNEQGHFPPPTTPEELGARIL
TQERYDKFGESEEVEMEVESEDEEDDEREEREDGRPTQPDQDTQLQDMDEGSDDEDDGKA
PLPPDNPMPPPLPPTPDQVIIRKDYDPKASKPQPPAKTLDEYLISPITGERIQASKMQEH
MRIGLLDPRWLEQRDRGIRERQIEDEVYAPGMDIESSLKQLAERRTDIFGVEETAIGKKI
GEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVQEDESKEKIGPS
KPELYHHHQSPLISSAPLLPKPSPPMNTMARAPPSMPPPVRTTLLSAVPVIPRPPMAPVQ
MRLAPGQVLTPMPPMMHAPRINVVPMPQPPHMMAPRPPPMVVPTSFVPAPPVPLPPRPDP
QPPSHPPPRHDDEPASKKMKTEDNLIPEEDFLRIYKGSVSVKVQVPNMQDKTEWKLSGQA
LNFTVPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMNNGSVIHLALK
ERGGRKK
NT seq 2364 nt   +upstreamnt  +downstreamnt
atgccgcctgggcctgtacaaattgttcagccggagctcaacaacagggcagatgagcca
acagaggaaaccccagcaacgaaacccatagttgggatcatctatccacctcctgaggtc
cgaaacatcgttgacaagactgccagttttgtagccaggaatggaccagagttcgaggca
aggatccgtcagaatgagatcaacaacccaaagttcaacttcctgaaccccaacgaccca
taccatgcctactaccgccacaaagtcaatgaattcaaggagggcaagggccaggagccg
tctgcagccgtaccaaaggttatgcagcagcaggccctgcagaactcacagcagcttcct
caaaaggtgcaggctcaggtgattcatgagacagtggtgccaaaggagcctccacccgag
tttgagttcattgctgaccctccttcaatctccgcattcgacctggatgttgtcaagctg
accgcccagtttgttgctcgcaacgggcgccagttcctcacacagctcatgcagaaagaa
cagcgaaactaccagtttgacttcctgcgacctcaacacagcctcttcaactacttcacc
aagctggtggagcagtacactaagattctgatccctcccaagggacttctgataaagctg
aaaagagagtctgagaaccccagggaggtgctggaccaggtgaggtaccgtgttgagtgg
gcgaagttccaggaacgtgaaaggaagaaggaggaggaggagcgggagaaagagcgtgtg
tcctacgcccaaattgactggcatgactttgtagtggtggagaccgtggacttccagcct
aatgaacaaggccacttccccccacccaccacacctgaggagctgggagctcgcatcctg
acccaggagcgttatgacaagtttggagagagcgaggaggtggagatggaggttgaaagc
gaggatgaggaggacgatgagcgggaggagcgggaagatgggcgtcccacacagcctgat
caggacacacagctgcaagacatggatgagggttctgatgacgaggatgatggcaaggca
ccattgcccccagacaaccccatgccacccccactgccccctactcctgaccaggtcatt
atccgcaaggactatgaccccaaagcctccaagccacagcctccagccaagactctggat
gagtacctcatctctcccatcacgggtgagaggatccaagccagtaagatgcaggagcac
atgcgcattggactactggatccccgctggctggagcagagggaccggggcatcagagag
aggcaaatcgaggacgaggtttacgcccctggcatggacattgagagcagcctgaaacag
ttggctgagaggcgtactgatatctttggtgtggaggagacagccatcggtaagaagatt
ggagaagaggagatccagaagcctgaagagaaggtgacctgggatgggcactctggcagc
atggcgcgtactcagcaggcagcacaggccaacatcaccctacaggagcagattgaggcc
attcacaaggccaagggactggtgcaggaggatgaaagcaaagagaagattggaccgagc
aagcctgagctttaccatcatcatcaatcaccccttatctcctctgccccccttctgccc
aaacccagccctccaatgaacacgatggctcgggcccctccttccatgccgccccctgta
cgcaccactctcctttcagctgtgcctgtgattccacggccccccatggcccctgtgcag
atgcgcctggccccagggcaggttctaacacccatgcctcccatgatgcatgctccccgc
atcaacgtggtgcccatgccccaaccacctcacatgatggcccccagaccaccccccatg
gtggtcccaacttcatttgtccctgcccctcccgtcccgctgcccccccgccctgacccg
cagccaccttcccacccacccccacgccatgatgatgagcctgccagcaagaagatgaag
acagaggacaaccttataccagaggaggatttcctccgcatatacaagggttcagtgtcg
gtcaaagtgcaagttcccaacatgcaggacaagacggaatggaagctaagtggacaagcg
ctcaatttcactgtcccactcacagatcaggtatctgttattaaagtcaaaatccatgaa
gccactggcatgccagctggaaaacaaaagctacagtatgagggaattttcatcaaagat
tctaactcgctggcctactacaacatgaacaacggttcagtcatacacctggcactgaag
gagagaggtgggagaaagaagtga

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