Campylobacter coli RM5611: YSU_01510
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Entry
YSU_01510 CDS
T03167
Name
(GenBank) recombinase RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ccoi
Campylobacter coli RM5611
Pathway
ccoi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
YSU_01510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoi03400
]
YSU_01510
Enzymes [BR:
ccoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
YSU_01510
DNA repair and recombination proteins [BR:
ccoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YSU_01510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
PDDEXK_1
Terminase_6N
Lig_C
Motif
Other DBs
NCBI-ProteinID:
AHK74568
LinkDB
All DBs
Position
298492..301254
Genome browser
AA seq
920 aa
AA seq
DB search
MKFKPFLALEASAGSGKTFALSVRFVALILQGAKINEILALTFTKKASNEMKKRIIETFL
NLEKESKKSECKELCELLGCEEDELIFLRDKKKQEFLRQELKISTFDSFFSRILRAFALN
LGLSSDFDTSEEKLDVRAVFLKLLNRQELKDLAYYKVSLEDNHDFFEELENFYENAYFKE
CVRIPNPSKASINQAYDDLRVYCLSLDHVKGYKYLCTHFKDEVLQLSQFAKSDLLNLTGA
PKYLQELEDSDVKFSQKRKAFIKALDAYAKELEEYKIANLMNLLSHFSKAKDIIQKDKNT
LSFSDISRRVLDLIRSDFKDMIYFRLDGYISHLLIDEFQDTSVVQYQILRPLIAELVSGE
GVKKNRTFFYVGDKKQSIYRFRKGKKELFDLLQTEFKQIQKDQLTINYRSKQILVDFVNK
TFQSKIKDYTPQLSLESKKGGFVRVIESQETKVDKDQAKEIQDKTLEALLEQLKFLKSKN
IIYDDICILCWKNNDADMILDFLHEQDIPAFTQSNILLENKACIRVLLEYAKYCIFGDKF
YLHFLKEMLGFEPLKLKLDLAKSAVQNVLYLIKELKLDLNDMALIQFIEYAKSKDDFLKL
LFEPCTLKIMSEQNRGINIMTVHKSKGLEFDHVILLDSLSKNNPNNKTIMLEYDIDQGWE
LHIKDSYRKATQESEYKAFIEKITKADYEDDINKLYVAFTRAKDNLIIIKRNASFQSGNY
PSYLNTMLDIEIQELGEIEIQTNDTHLPQKESFQALMEFEKIPLQDIERKENTSSDEIYF
GNAFHFFMQNLKLPQGENFDILCQKVSGKFRHFLNHDDFERLFKRIKNLLANAQFQKLIE
NKKLLKEQALSFQGEIKQLDLLALGEDEAIIIDYKTGLNFNKHKEQVLLYKEAIEKILAK
KSTQAFLVYVLEDKVEIIEI
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaagccttttttagccttagaagcaagcgcaggaagcggtaaaacttttgcc
ttaagtgtgcgttttgtggctcttattttacaaggagcaaaaataaatgaaattttagct
ctaacttttaccaaaaaagcaagcaacgaaatgaaaaaaaggattatcgaaactttttta
aatttggaaaaagaaagtaaaaaaagcgagtgtaaagagctttgtgagcttttagggtgc
gaagaagacgagctgatatttttaagagataagaaaaaacaagagtttttaagacaagag
cttaagataagcacatttgattctttttttagtcgaattttaagagcctttgctttaaat
ttgggattaagtagtgattttgatacaagtgaagaaaagctcgatgttagggctgttttt
ttaaaattactcaaccgccaagaattaaaagatttagcttattataaggtgagtttagaa
gataatcatgatttttttgaagagcttgagaatttctatgaaaatgcgtattttaaagaa
tgcgtaaggattcctaatccttcaaaagcttctatcaatcaagcctatgatgatttaagg
gtttattgtttaagcttagatcatgtcaaaggatataaatatttatgcacgcattttaaa
gatgaagtgcttcaattaagccaatttgcaaagtcagatcttttgaatttaacaggtgct
ccaaaatacttgcaagaattagaagatagcgatgttaaattcagccaaaaaagaaaagca
ttcatcaaagctttagatgcttatgctaaagagcttgaagaatataagatcgcaaattta
atgaatcttttaagccattttagcaaggctaaagatatcatccaaaaagataaaaatact
ttaagctttagcgatattagccgaagggtgctagatcttatcagaagtgattttaaagat
atgatttattttcgcttggatggctatatttctcatttattaatcgatgaatttcaagat
actagcgtggtgcagtatcaaattttaagacctttgatcgccgagcttgtttcgggcgag
ggcgtgaagaaaaatagaacctttttttatgtgggcgataaaaaacaaagtatctatcgt
tttagaaagggcaaaaaagaactttttgatttgttgcaaactgaatttaaacaaattcaa
aaagatcaactcacgatcaattaccgctctaaacaaattttggttgattttgtcaataaa
acctttcaaagcaagattaaagactacacccctcaactttctttagaaagcaaaaaaggt
ggctttgtgcgtgtgatcgagtcgcaagaaacaaaggtggataaagatcaagctaaagaa
attcaagataaaaccctagaagctttgctagagcagcttaaatttttaaaaagtaaaaat
atcatttatgatgatatttgcattttgtgttggaaaaataacgatgcggatatgattttg
gattttttacacgagcaagatatcccagcctttactcaaagtaatattttactcgaaaat
aaagcctgcataagagtgcttttagaatacgctaaatactgcatttttggcgataagttt
tacttgcattttttaaaagaaatgttaggttttgagcctttgaaattaaagcttgatttg
gcaaaaagtgctgtgcaaaatgtgctttatttgatcaaagaattaaaacttgatcttaat
gatatggctttgattcagtttatagaatacgctaaaagcaaggatgattttttaaagctt
ttgtttgagccttgcactttaaaaattatgagtgagcaaaatagaggtataaatatcatg
actgtgcacaaatccaagggcttggaatttgatcatgtgattttacttgatagtctttca
aaaaacaatcccaacaataaaaccataatgcttgagtacgatatcgatcaaggttgggag
cttcacataaaagatagctaccgaaaagcgactcaagagagcgaatataaagcttttata
gagaaaatcacaaaagcagattacgaagatgatatcaataagctttatgttgcttttaca
agggcaaaagacaatcttatcatcatcaaaagaaatgcctcgtttcaaagtggaaattat
ccaagttatttaaacactatgcttgatattgaaattcaagaattaggcgagatagaaatt
caaaccaatgacacccacttgcctcaaaaagaaagctttcaagccttaatggaatttgaa
aaaattcctttgcaggatatagaaagaaaagaaaatacaagctcggatgaaatttatttt
ggaaatgcttttcacttttttatgcagaatttaaagcttccacaaggagaaaattttgac
attctttgtcagaaggtgagtggtaaatttagacattttttaaatcacgatgattttgaa
aggctttttaaaaggataaaaaatttacttgctaatgcccaatttcaaaaactcatcgaa
aataaaaaattgctcaaagagcaagctttgagttttcaaggtgagattaaacagcttgat
ttgcttgctttaggcgaggatgaagctatcattatagactataaaacgggtttgaatttc
aataagcataaagagcaggttttgctttataaagaagctatagagaagattttggctaag
aaatcaactcaagcttttttagtttatgttttagaagataaggtggagataatagagatt
taa
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