Chondrus crispus (carragheen): CHC_T00002315001
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Entry
CHC_T00002315001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CHC_T00002315001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccp03021
]
CHC_T00002315001
03036 Chromosome and associated proteins [BR:
ccp03036
]
CHC_T00002315001
Transcription machinery [BR:
ccp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
CHC_T00002315001
Coactivators
SAGA/TFTC/STAGA complex
CHC_T00002315001
Chromosome and associated proteins [BR:
ccp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
CHC_T00002315001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
Motif
Other DBs
NCBI-GeneID:
17321106
NCBI-ProteinID:
XP_005713396
UniProt:
R7Q6Z9
LinkDB
All DBs
AA seq
918 aa
AA seq
DB search
MPNINARAADSKVSAEYRRQQLQAKAIPKREPTASVGGHVRAVTSSAAASSQSAASSARP
DITAELNAVMKKTGTSTHARGASRAVPVAGIPQQRMPPGQPAPGQGRPQAAKISQEQVIV
GHFCRFAIKTLTKVMEGSPLKQTAEVSLKEHIKKAWAQWVRGHIPRQKLLESVARFVRDS
CPQAFGIDLIREFKEWYESEFERQKAQSGRGERKVPQQQFQHVGQQQRRQVVQNKQIPLH
IHQMKQQQARSAALQPPGANAKMQYSMPGTVPGRAAVGSKASGKEAQLINPHIVKKEAQL
PGKTGGKSISRKTVPSRKTSSPNTPKVGASRAAPGKAPGVRSIGGKSILRPPSTLPAAHV
ALKGPTATNVPKVSVMGGVAGKAVTGSKGLLANKLPAGLVHKVAPGTKPKGPRKAPVKNA
AKTSPLKGAAKSQASKSLSKTISKGSVVRQKPSLPVISGSAGAGSAAVAPGSIKRPFDAG
SGSPTGSSMKKPKPTPKASKGPTNRRKAGPFPSSTDPNRPTKPQPARIDTAKGRTGPGTN
MGSGGGSALATGKGGSSNSAPGGTGPGTQVRKAKRVDDELNLVNDVVDLDDEVDKLGEDA
GVVNTEVIEIIDYDPGMLLSGPALRTKMQVTAKRYALSENISKDAMEIVSLAVQERLRNL
LESLKGIARVRIEANKESWNTEYFGQNVHEKLELMREDEERSLTVAAELRVKRKKEQEER
EAKKLAGEAEMEEKKIKDASAAAELERKEKIALEKKRKENSSQRDALSGLVAGIDKRRKK
PATGKGLAGLAPLLPPITKSGGSRTSGSSLPPIPKLVSSAGGDSMSNKSVGTNGKKIDQL
EKLKALCPLVSLGGPRTSSMPGTEPSAKKDVPKPQPKLPLTLRDCIFLMESEQNTRKSSH
IYKWYARLNRVRQAVKGK
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgcccaatatcaacgccagagccgccgacagcaaggtttctgccgaatataggagacag
cagctgcaagcaaaggccatcccgaagagagagcctaccgcatccgtcggggggcacgtg
cgcgctgtcacaagtagcgctgcggcgagttcgcagtctgccgcgtcatcagcccggccg
gatattacggccgagctcaacgccgtcatgaagaaaactggcacttcaacccatgctagg
ggagcttctcgtgccgtgccagtcgcagggataccgcagcagcgcatgccaccaggccag
cccgcaccggggcagggccgtcctcaggcggctaagatttcgcaagagcaagttatcgtt
ggtcacttttgccgctttgcaatcaagactctgactaaagttatggaaggaagcccgctc
aaacagacagcggaggtcagcttaaaggagcatattaagaaagcgtgggctcagtgggtg
agaggacacattccgcggcagaagctgctcgagtctgtagctcgctttgtgcgagatagc
tgcccccaagcgtttggcattgacctgattcgagagtttaaggagtggtacgagagcgag
tttgagcggcaaaaagctcagtcaggccgcggggaaagaaaggtgccgcagcaacagttt
cagcatgtgggccaacagcagagaaggcaggtggtgcagaacaaacagattccgttgcac
atccatcaaatgaagcagcagcaggcgcgatccgcggccttgcagccaccaggcgccaat
gcgaagatgcagtattcgatgccggggacagttccagggagagctgcagtagggtcgaag
gcttctggaaaggaggcacaactgataaacccgcatattgtgaaaaaggaagcccaactg
cctgggaagactggtggaaagagtatatccagaaaaacggtaccttcgagaaagacatcc
tctccaaacacaccaaaggttggtgcaagcagagcagcacctgggaaagctcctggggtc
agatccatcggaggaaagagtatcttacgaccaccatctactctgcccgcagcacatgtt
gccttgaaaggccctactgcgaccaatgtaccgaaagtgtctgtgatgggaggtgtagca
ggaaaagcggttacagggagcaaaggattgctggcgaacaaacttcccgcaggtttagtc
cacaaggtagctccgggtaccaaaccaaagggccctcgaaaggcaccggtgaaaaatgcc
gctaagacttctccactgaaaggagctgcgaaatctcaagcatcaaagagtctgagcaaa
accatttcaaagggatccgttgtgaggcagaagccctcattacctgtgatatctggaagt
gcaggagcagggtccgcagcagtcgctccaggctctataaagcgaccattcgatgccggt
agcggatcaccgacgggcagttccatgaaaaaaccgaagccaactcccaaggcgtcgaag
ggacctaccaataggcgaaaagcgggcccttttccttcctccaccgacccgaatagacct
accaagccgcagccggcaaggatcgatacagcaaaggggcgaacaggccccggcaccaac
atgggaagtggaggtggaagtgcgctggctactggcaaaggtggctcctccaactcggct
cctgggggcactggtcctggaactcaagttcggaaggccaagcgcgtcgacgacgagttg
aatcttgtgaacgatgtcgtagacctcgacgatgaggtcgacaaactcggcgaggatgca
ggtgtggtaaataccgaagtcatcgaaattatcgattatgaccccggtatgctcttgtca
ggcccagctctaaggacaaagatgcaagtgactgcgaagcgctacgctctgagcgaaaac
atttcaaaggatgccatggaaattgtttcactggccgtacaagaacggctgcggaacctt
ttggagtctttaaagggcattgcaagggtacggatcgaggctaacaaagagtcttggaac
acggaatatttcggccaaaacgttcacgaaaagctcgagttaatgcgtgaggatgaagaa
cgatctttgactgttgctgcggagttacgcgtgaagagaaagaaagagcaggaggaacgc
gaggcaaagaagctcgctggggaggctgaaatggaagagaagaagattaaagatgctagt
gcggcagccgagctcgagcgaaaggagaagatcgctctagagaagaagcgcaaagagaat
agtagtcaacgagatgccttgtccggattagtagcgggtattgacaagaggcgcaagaag
ccagcaaccggaaaaggcttggcgggattggcgccactactcccgcctatcacgaagtct
ggaggctcccgcacgagtggttcgagcttgcccccaattcctaagctcgtcagctcagcc
ggtggggatagtatgtccaacaagagtgtgggcacgaatggaaagaagatcgatcaatta
gaaaagctgaaggctctctgtcccctagttagtttgggtggaccgcgaacatctagcatg
ccaggaacagaacccagtgcgaaaaaggacgtccccaagccgcaaccaaagctcccgcta
acattaagagattgtatattcttgatggaatcggagcaaaacaccaggaagagctctcat
atttacaaatggtacgcccgtttgaatagagttcgccaagctgtgaagggaaaatag
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