KEGG   Chondrus crispus (carragheen): CHC_T00010242001
Entry
CHC_T00010242001  CDS       T02916                                 
Name
(RefSeq) Sm protein, snRNP core protein, SmB
  KO
K11086  small nuclear ribonucleoprotein B and B'
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHC_T00010242001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccp03019]
    CHC_T00010242001
   03041 Spliceosome [BR:ccp03041]
    CHC_T00010242001
   03032 DNA replication proteins [BR:ccp03032]
    CHC_T00010242001
Messenger RNA biogenesis [BR:ccp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     CHC_T00010242001
Spliceosome [BR:ccp03041]
 Complex A
  U1 snRNP components
   Sm proteins
    CHC_T00010242001
  U2 snRNP components
    CHC_T00010242001
 Complex B
  U1 snRNP components
    CHC_T00010242001
  U4/U6.U5 tri-snRNP components
    CHC_T00010242001
 Complex C
  U2 snRNP components
    CHC_T00010242001
DNA replication proteins [BR:ccp03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     CHC_T00010242001
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 17322993
NCBI-ProteinID: XP_005715280
UniProt: R7QDE4
LinkDB
AA seq 195 aa
MSLTKSSKMLQFINYRMRITLDDRRTLVGRFLAFDKHMNVVLADCEEFRKAKKAETEERR
ALGLVLLRGESVVSIAVESPPAPKKGKRSATAAGLTAQPDRPSPMGRGMAAPGLAGPAPG
LGGGSLAAMQPQLSSNPQLYQPPPYGRGGPPMPAYGRGMAPPLGIPAPQAYGNGVRPGMP
MPPPPGYGRGMVSPK
NT seq 588 nt   +upstreamnt  +downstreamnt
atgtcgctcacaaaaagcagcaaaatgctgcagtttatcaactaccgcatgcgaatcacc
ctggatgatagacgcacgctcgtcggacgctttctcgcttttgacaagcacatgaatgtc
gtcttggccgactgcgaagagtttcgcaaggcgaagaaagcggaaaccgaagagaggcgc
gcccttggccttgtccttctgcggggcgaaagcgtcgtttcgattgcagttgagtctccc
ccggcgcccaagaaagggaagcgaagcgcaacggcggctggtctgaccgcgcaacccgat
cgaccttcgccgatgggtcgcggcatggcagctccagggctcgctggtccagcgccagga
ctcggcggggggagtttggcagcgatgcaacctcaactgtcgtcgaacccgcaactttat
cagccgcctccatatgggcgcggcggtcctcctatgccggcgtatggaaggggtatggct
ccgccactggggataccggcgccacaggcgtacggtaacggagtacgaccagggatgcct
atgccaccgccgccgggctatggaagaggaatggtaagtcctaaataa

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