Colias croceus (clouded yellow): 123704258
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Entry
123704258 CDS
T08651
Name
(RefSeq) uncharacterized protein LOC123704258
Organism
ccrc
Colias croceus (clouded yellow)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RT_RNaseH
RT_RNaseH_2
RVT_1
Integrase_H2C2
rve
Ty3_capsid
gag-asp_proteas
Retrotrans_gag
Asp_protease_2
RVP
CLIP1_ZNF
AT_hook
Motif
Other DBs
NCBI-GeneID:
123704258
NCBI-ProteinID:
XP_045508522
LinkDB
All DBs
Position
29:complement(1673698..1679292)
Genome browser
AA seq
1742 aa
AA seq
DB search
MSMLLTYDAATWWQGIKNQISTWDEVVFNLRSAYGDRRPPHRIYRDLFENEQGKENTDVF
VAKARALLARLPPSDLTEKVKLDMIYGLLNIRIRKRLRREEFTTFAELLKHARNIEDSMG
EEVRRASTARPSPSAGASTFRAAPAPSAAAGPQARGAPAMRARPAASCSPPPHRATAALH
APAPPQPQARGAPGVNATPRAPPTTSASGSGHARPYCTYCKRYGHRREQCRKLEDRGESY
SHNNNSYNASESAVNYVNKSEKFYSLELPVRDRDFQNSSFGTVNNDYCNREKLTGIPYEN
KFCHSDILFTNDTYNNHNHKSHLICSHNNQKCTQSTDVVCNVNDKCACYANNVENVPTPC
NGAIPKFKKSDTDFVQNCYNFRSHKIDDVIHTCTREKCNKFNFVCNNNCEQIRCHKGNDV
KISHMCPEGKGSNSDLSHNVPCSCCNDVKGKRTCNSSMHDVKGKRTCNSTMQKCIKSDFA
CNCIKFSNYKIDDIVTTCPQVKGHKSDFSQNLVTTENVVFSQNDTKGKHTCNGTIQKCIK
SDFECNCINFSNYKTCNKSDFSQKSTDVKNSNFTDDVNLIYCYDDNYVRIRNDDDLLACS
VGDRPVKRRDLRPIFKIEILGVNGTALIDTAAKHCIAGHTLYALLLRKGHPLTPSTRKIK
LADGHAREMNVLTTTLQVRLEHVIITIPFLIFPESGDNETLLGIDFLRAMGVVINFSKEL
WYFDNDHRVKHTLFFEPTSRGTTCASTDVLRDDEGTQLESAERDELAQILVKHAHIFRLG
GAPTPFAEHRIDTGEHPPIAVPPYRLNPAKKEVMKKEIEKMLQEDIIEECESAWCAPALM
IPKARGGVRFCVDYRRLNAVTKSDTYPMPLIDELLQSTKRNCFMSTLDLRSGYWQVSVQI
EDRDKTAFISPLGIYRFKRMPFGLKNAPATFQRLIDRLRSCASLKDVVLLAYLDDLLIIS
SGFQQHLKDLEAVFERLTEYNLHVNREKCVFARERVKYLGHIITQEGVSIDNDKVSAVLE
MKEPANLKHMRTFLQTCSWFRKFIPNFSQVAEPLTRLTRKNQPWTWGEAQLQAFNELKRL
LTSAPILTQADFSRPFILRTDASNYALGAVLLQGELKEERPIEYASRLLTSAERNYSTTE
REALAVVWAVERFRSYLDGQPVIIGSDHQPLRWLLTLKSPTGRLVRWALKLQSFDIQFQY
TPGKANVVADTLSRPICTGETRDQCGICTVIIDVPVKKPDVLRQEQLADPELEKIVKELE
ATEEVAAQRWTERGYMMDQGVLYRYNPDSDSESPQLVVPAGQQQDILKQCHDSAVAGHPG
IDNTYKKVSQLYFFTGMRRIIADYVKACVQCQRYKATNNKPPGLLQTPVMNQRNEVLAID
LFGPLREGEEGERWILLVEDTATRWVELYALKDATAEACARVLIEEFFMRFGLPRRIISD
NGVQFISAVMRQCMSVLGVTQNLVPLYHPEANPAERKNRDLKAQLARLVEGDHSTWPKNL
PVIRFALNSAVCRTTGTTPAYLTFGRELRSPSEATHDQRAILDKDNFVPQITPYLRRFLS
SLSAIRERVEKQQDKAKEYADQARRRMEYKVGDKVLLKSHLLSKGSKALTAKFMPRRDGP
YVITKKISPTTYNIARMELPHEIIGKYHVQDLTPFISNDDTPPEPVNPVKKRGRPKKVKE
QLVQERGRTPELEGEYIVNRSPVAARVLTTRASRGRLPIRFASPPAPLCNGRRISRTCSR
YC
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgttgttgacgtatgatgcggccacctggtggcagggcattaagaatcaaata
tctacttgggacgaggtcgtatttaacttaagaagcgcttacggcgaccgacggccgccc
cacagaatataccgcgacttgttcgaaaacgaacaagggaaagaaaatacagatgtgttc
gtggcgaaagctcgcgccttgttggcaaggttgccaccgagtgacttaacggaaaaagtg
aaactagatatgatatacggcctgttaaacattcgtataagaaaacgactccgcagagag
gagtttacgacattcgccgagttactaaaacacgctagaaatattgaagactccatggga
gaagaggtacgacgagcatcaacagcgaggccatcgccatccgccggcgcgagtactttc
cgcgccgctccggccccctccgctgccgccggaccgcaggcacgaggcgcgcccgcgatg
cgcgcgcggcctgcggcctcttgttcgccgccgccgcaccgcgccaccgcagccctgcac
gcgcccgcgccgccgcagccgcaagcgcgcggagcgcctggcgtgaacgcgacacctcgg
gctcctccgacaacctcggcctccggctcgggtcatgcacgtccctactgtacctactgc
aagcgctacggtcaccgacgtgaacagtgtcgtaagttagaggacagaggtgagtcttac
agtcataataataactcttataacgcgagtgaaagtgccgtaaattacgtaaataaatcg
gaaaagttctatagtctcgaattacccgtgcgtgatcgtgattttcaaaatagttcgttt
ggtacagtgaacaatgactactgtaatcgtgaaaagctgaccggtattccttatgaaaat
aagttctgtcattcggacattttgttcacgaacgatacatacaacaatcataatcacaag
tcacatctgatctgttcccataataaccaaaagtgtacacaaagtacagatgttgtatgt
aacgttaacgacaagtgtgcctgttatgctaataatgttgaaaatgtacctacaccttgt
aacggagctataccgaaatttaaaaagtccgataccgattttgtacaaaattgttataat
tttcgtagtcacaaaatcgatgacgtaattcatacctgtacacgggaaaaatgtaacaag
tttaactttgtatgtaataataattgtgaacaaattcgttgtcacaaaggcaatgacgta
aagatttcgcacatgtgtcccgaaggaaagggcagtaactcagatttatcacacaacgtt
ccgtgttcttgttgtaacgatgttaagggcaagcgtacatgtaacagttcaatgcacgac
gttaagggcaagcgtacatgtaacagtacaatgcaaaagtgtattaagtcggattttgca
tgtaattgtattaaattttcaaactataaaatcgatgatattgtaacaacctgccctcaa
gtaaaaggtcataagtctgatttttcacaaaatcttgttaccaccgaaaatgttgttttt
tctcaaaatgacactaagggtaagcatacatgtaacggtacaattcaaaagtgtattaag
tcggattttgaatgtaattgtataaatttttcaaactataaaacctgtaataagtcagat
ttttcgcaaaaatcaacggatgtaaaaaacagtaactttactgatgatgtgaatttaata
tattgttatgatgataattatgtgcgtattaggaacgatgacgatttgttggcatgtagc
gtcggcgacaggcccgtcaagcgtcgcgacttacgtcccattttcaaaatcgagattttg
ggagtaaatggtacagctttaattgatactgccgcgaaacactgtattgccggtcacaca
ctatatgctctccttctacgcaaaggccacccgctcacgccctcgacgaggaaaattaaa
ctcgccgatggccacgcacgcgaaatgaacgttctcactaccacgttgcaggtgcggttg
gaacacgttatcatcacaataccatttcttattttccccgagtccggcgacaatgagacg
ttactcggtatagatttccttagggctatgggtgtcgttattaatttctccaaggaatta
tggtattttgacaacgatcatcgcgttaaacatacgctattttttgaaccaacttcgcgt
ggcactacttgtgcctctacagatgttctccgggatgacgagggtactcagctggagtcg
gcagaacgagacgaactcgcccagatcctcgttaagcacgcgcacattttccgtctaggg
ggagctcctacgcctttcgcggagcaccgtatagatacaggtgaacatccaccgatagca
gtgcccccataccgtttgaatcccgcgaagaaagaggtgatgaaaaaagaaattgagaaa
atgctgcaggaagatataattgaagagtgcgagtccgcatggtgcgctccagcgttgatg
atacctaaggctcgtgggggcgtcaggttctgtgtagattacaggcgcctgaacgctgtt
accaaatcggacacgtaccctatgccactaattgatgagctcctgcaatcaacaaaaagg
aactgcttcatgagcacgctggacctcagatctgggtactggcaagtgagcgtccagata
gaagacagggataagacagccttcatatctccgcttggcatatatcgctttaagcgcatg
cctttcggcctcaagaacgcgccggccacattccagcggctgatcgaccgcctccgctcc
tgcgcatcattaaaggatgtagtcctgttagcctatttagatgacctcctgataatctca
agtggattccaacagcacctcaaagaccttgaggcagttttcgagcgcttgactgaatat
aacctccatgtaaatagggagaagtgtgtttttgcaagggagagagtaaagtaccttgga
cacataatcacacaggaaggcgtctccatcgacaatgataaagtaagcgcggtactcgaa
atgaaggagccggccaatctcaagcacatgagaaccttccttcaaacgtgttcgtggttt
aggaaatttattcctaacttttcccaagtggctgaaccgttaacgcgtttgacacgaaag
aaccaaccatggacttggggtgaagctcaattacaagcgttcaatgagctcaagcggttg
ctgacttcagccccaattttgacccaagctgattttagtcggccttttatattacgaacg
gatgccagtaattacgctttaggagctgttttacttcagggggagttaaaagaggaaaga
ccaatcgagtacgcgagtcgactccttacctcagcggaacgaaactactctaccaccgag
cgtgaagctctagcggtggtatgggcagtcgaacgtttcagatcatacctcgatgggcaa
cccgttattattggaagtgatcaccaaccactccgctggctgctgaccctaaaatcacca
accggtcgattagtgcggtgggctctcaaactccagtcgtttgatatacaattccagtat
actccaggtaaagcaaatgttgtggccgacacattaagtaggccgatctgcacaggagaa
acccgcgatcaatgcggcatttgcactgtaataatagacgtacctgtgaagaaaccggat
gtgttgagacaagaacagctggcagatccagaactggagaagattgtcaaggagctcgaa
gccaccgaggaagtcgcagcccagcgatggacagagcggggatatatgatggatcaagga
gtgctgtaccggtataaccccgactcggacagtgaatcaccacaactcgtagttccagct
ggtcaacagcaagacatcttgaagcaatgtcatgactctgcagtagcagggcatcctggt
attgacaatacttacaagaaagtatcacagctatacttcttcacaggaatgcgcaggata
atagccgactacgtgaaagcctgcgttcaatgccaacgatacaaggccaccaataacaag
cctccaggcctcctccagacgcccgtcatgaatcaacgtaacgaggtgttggccatagat
ctattcggcccattacgggaaggagaggaaggggaacggtggatattgctcgttgaagac
acggccacaagatgggtagagctatacgcgcttaaggatgctacagctgaagcctgcgca
cgtgtcctcatcgaagaattcttcatgcggtttgggttgcctcgtcggatcatatccgac
aacggagttcagttcatttcggcagtcatgcgtcaatgtatgtcagtcttgggtgtgaca
cagaacttggtgccactataccacccagaagccaacccagcagaaaggaaaaaccgcgac
cttaaggcacagttagcacgattggttgaaggagaccatagtacctggcccaagaacttg
ccggtgatcagatttgctctaaatagtgccgtgtgccgtacaacaggaacaacaccggcg
tacctgacattcggaagagagctgcggtcaccttcggaagcaacacatgaccaacgtgcc
atactggacaaagataactttgttccacaaataacaccctacttacgacgattcctcagc
tcgttgtcagcgatcagagaacgagtcgagaagcaacaggacaaggcgaaagaatacgcc
gaccaggcgcgtcggcggatggaatacaaggtgggtgataaggtgctactaaaatcgcac
ctcttgagcaaaggttcaaaggcactcactgcaaaattcatgccgagacgcgatggtcct
tacgtcatcaccaagaagataagccctacgacgtacaacattgcgcgtatggagctgcct
cacgagattatagggaaataccatgttcaagatttaaccccgttcattagtaacgatgat
actccgccggaacctgttaaccccgtcaagaaacgcggacgaccgaagaaggtaaaagag
cagctagtccaggaacgagggcgtacacctgaactagagggggagtatatagtaaaccgt
agtcctgtagccgcccgcgtcttaaccacaagggcctctcgcggacgcttgccaataagg
ttcgcctcacctcccgcgcccctctgtaacggccggcgcatctcccgcacgtgtagccgt
tattgttag
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