Chrysoperla carnea: 123300439
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Entry
123300439 CDS
T09255
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123300439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccrn03041
]
123300439
Enzymes [BR:
ccrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123300439
Spliceosome [BR:
ccrn03041
]
Complex A
U2 snRNP components
U2 related factors
123300439
Complex B
123300439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
123300439
NCBI-ProteinID:
XP_044738947
LinkDB
All DBs
Position
5:complement(9699992..9703997)
Genome browser
AA seq
1017 aa
AA seq
DB search
MVRGRDRTPERSKRRRSRSKDRSHSIERTRDRSRERNKQSRHRRSRSRERERDSRRDRER
RSHSRERRTRGDSKEKRTAGSSSNNSSKRRRSRDRSRERDRSRSPRHEKKVEESQHGEEI
FDPGLLDKEEEQKRLELEMQKRRERIERWRAERKKKEQEVTRREARQGTLVAGLTIPTGT
VKKWSLEDDDDEEDEEINKEGEGKAEEEVDPLDAFMQEVHAEVRKVNKLDQRKEGTIGEG
GLKPANVVIMTGVAKKTVSKNKGELIEQNQDGLEYSSEEEQEDVKDTAANMANKQKKELA
KVDHSEMEYMTFRKNFYVEVPEIAKMTPEEVEAYREELESIRVRGKGCPKPIRTWAQCGV
SKKQLEILKKLNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPP
LEENDGPIAIIMTPTRELCMQIGKDIKKFSKSLNLQVVCVYGGTGISEQIAELKRRAEII
VCTPGRMIDMLAANNGKVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNIRPDRQTVMF
SATFPRQMEALARRILQKPIEIQVGGRSVVCKDVEQHVVILEEDQKFLKLLELLGIYQEQ
GSIIVFVDKQENADILLKDLMKASYACMSLHGGIDQFDRDSTIIDFKSGKVKLLIATSVA
ARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITQEQERYSGDIVRAFE
LASVPVPEALRTMWETYKAKQEAEGKKVHKGGGFSGKGFKFDETEAAAVNEKKKFQKAAL
GLQDSDDEDVENDIDQQIESMFATKRIVKEIKAPIGLINNPALASIGQNSAVDKLELAKK
LASKINLAKNLGAEAKGATQQAAEAILKGGGSQPLITAKTVAEQLAAKLNTRLNYQPRED
DDRGTGTDTSEQTFHKYEEELEINDFPQQARWRVTSKEALDQISEYSEAGITVRGTYVLP
GKTAPEGERKLYLAIESTNELAVSKAKAEITRLIKEELLKLQTSGHHAFNKARYKVV
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atggttcgaggacgagatagaacgccggaacgaagtaaacgacgacgatctaggagtaaa
gatcgtagtcatagcatagaacggaccagagatagaagccgtgaacgaaataaacaaagt
cgtcatagacgtagtcgatctcgtgaaagagaacgcgatagtcgacgggatcgtgaacga
agatcacatagtcgtgaaagaagaactagaggcgatagtaaagaaaaacgtacggcagga
agtagtagtaataacagttcaaaacgtagaagatctcgagacagatcgagggaaagagat
agatctcgatcacctcgtcatgagaaaaaagttgaagaaagtcaacatggcgaagagata
tttgatcctggtttattggataaggaggaggaacagaaacgattggagttagaaatgcag
aaacgtcgtgaaagaattgaaagatggagagctgaacgtaagaagaaagagcaggaagta
acgaggcgtgaagcacgtcaaggtacattagtggctggattaaccattcctactggaacg
gtgaaaaaatggtctttagaagatgacgatgatgaggaagacgaagaaattaataaagaa
ggtgaaggcaaagcagaagaagaagtagacccacttgatgctttcatgcaagaggtccat
gcagaagttcgtaaagtgaataaattagatcaaagaaaagaaggtacaattggtgaaggt
ggccttaaaccagcaaatgttgtaattatgactggtgttgcgaaaaaaacagtaagtaaa
aataaaggtgaactaattgaacagaatcaagatggcttagagtattcatctgaagaagaa
caagaagatgtgaaagacaccgcagccaatatggcaaacaaacaaaagaaagaattggca
aaagtcgatcattctgaaatggagtatatgacattcagaaagaatttctacgtagaagta
cctgaaattgcaaaaatgacacctgaagaagttgaagcatatcgtgaagaattagaaagt
atacgagtgcgtgggaaaggatgtccaaagccaattcgaacgtgggctcaatgtggtgtg
tcgaaaaaacaattagaaatattgaaaaagttaaattatgagaaacctactccaattcaa
gcacaagctatccctgctatcatgtcgggacgtgatttgattggaatagcaaaaactggt
agtgggaaaactttagcatttatattacctatgttcagacatattttagatcaacctccg
ttagaagagaacgacggtcccatagcaattattatgacaccaactagagaattatgtatg
caaattggtaaagacattaaaaaattttccaaaagcttaaatttacaagttgtttgtgtg
tacggtggaacgggaatttctgagcaaattgctgaattaaaacgacgtgcagaaattata
gtatgtacacccggacgtatgattgatatgttagcggcgaataatggaaaagttacaaat
ttacgtcgagtcacatatattgtgctagatgaggctgatcgaatgtttgacatgggtttt
gagccacaagttatgcgaattattgataatattcgacctgatcgacagactgtaatgttc
agtgcgacattccctcgacaaatggaagcattagcacgtcgaattttacaaaaaccaata
gaaattcaagttggaggaagatcagttgtgtgcaaggatgtcgaacaacacgtagtaatt
cttgaagaagatcaaaaattcttaaaattattagaattactaggtatttatcaagaacaa
ggaagtattattgtattcgttgataaacaggagaatgctgatatacttctaaaagattta
atgaaagcttcatatgcttgtatgagtcttcatggaggtatcgatcaatttgatcgtgat
tcaacaattattgattttaaatcgggtaaagtgaaattattaatcgctacgtccgtcgca
gctagaggtttagatgtaaaacaattaattttggttgtaaattacgattgtccgaatcat
tatgaagattatgtccatcgttgtggaagaactggacgagcgggtaataaaggattcgct
tacacttttatcacacaagaacaagaacgatattctggagatatagttcgtgcttttgaa
ctagcatcagttccggtaccagaagctttacgaacgatgtgggaaacttacaaagcaaaa
caagaggctgagggtaaaaaagtacataaaggtggtggatttagtggtaaaggttttaaa
tttgatgaaactgaagcggctgctgttaacgaaaagaagaagtttcagaaagctgcattg
ggtctacaagattctgacgatgaagatgttgagaatgatattgatcaacaaattgaaagt
atgtttgcaacgaaacgtattgttaaggaaattaaagcgccgattggtcttattaataac
ccagcattagcaagtattggacaaaattcggctgttgataaattagaattggcgaaaaaa
ttagcatcgaaaattaatttagcaaagaatttaggtgctgaggctaaaggtgctacacaa
caagctgccgaggctatacttaaaggaggtggttcacaacctttgattacggctaaaaca
gttgccgaacaattagcggctaaattaaatactcgtcttaattatcaaccacgtgaagat
gatgatcgtggtacaggcactgacacttctgaacaaacattccacaaatatgaagaagaa
cttgaaattaatgatttcccacaacaagccagatggcgagttacatcaaaggaagcattg
gatcaaatatccgaatattcagaagctggtattacagtacgtggtacttatgtattacct
ggtaaaacggcaccggaaggtgaacgtaaattgtaccttgcaattgagagtacaaatgaa
ttggctgtatcaaaagcaaaagcagaaattactcgacttattaaagaagaattacttaaa
ttacaaacttcaggacatcatgcattcaataaggctcgatataaagttgtatga
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