Corvus cornix (hooded crow): 104692622
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Entry
104692622 CDS
T03546
Symbol
COL22A1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
ccw
Corvus cornix (hooded crow)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
104692622
NCBI-ProteinID:
XP_010403025
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All DBs
Position
2:complement(149436701..149663991)
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AA seq
1614 aa
AA seq
DB search
MSMMGRCCILHLLVLLTFVFSGERTEAQRAGCKSVHYDLVFLLDASSSVGKEDFEKVRQW
VSNLVETFEIGPDKTRVGVVRYSDRPTTEFDLGKYKTREEIKEAARKIQYYGGNTNTGDA
LRYITTYSFSKEAGGRLSDRTVKKVAILLTDGRSQDFVLDPATAAHQAGIRIFAVGVGEA
LKEELDEIASEPKSAHVFHVSDYNAIDKIRGKLRRRLCENVLCPNVHVEGDRFKHTNGGT
DEIPGFDLMDSFSVKQIFGMKEDGIQSAYVRLGSFPVVQKTEDVFPQGLPDEYAFVTTFK
FRKASRKEDWYIWQIIDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRVVFRNTRVSDLF
DRNWHKIALSIQAKAVSLYIDCKLVQMLPIEDRENIDIQGKTVIGKRLYDSVPIDFDLQR
MVIYCDSRHAELETCCDIPSGPCQVTVLTEAPPLEVRPTVGSEQVGHLKIFNCSCPPGQK
GERGPLGFEGPKGQKGERGIPGLPGLRGEKGESGKAYGIGEKGEKGEEGFPGFPGLKGDK
GEKGSLGSPGPPGRDGAKGEAGEPGQPGAFGLPGPAGPKGSEGKQGPPGIKGYVGAPGLQ
GERGEKGTRGDKGERGLDGFPGKPGVEGKQGPPGSPGPPGASGTKGEKGEPGLPGLPGTL
VHTEGLKGEEGKPGPRGPQGQPGLPGPPGHPGLEGKPGVPGLPGQRGKKGEPGFPGINGL
IGPQGPPGPPGIAGPLGPPGPPGLPGEIGVSGKTGPPGPAGLPGKDGLNGLPGLPGLKGE
RGEKGEEGFPGKAGPKGEPGSRGQPGEQGEAGFPGPRGLPGLRGEKGDRGEKGRDGLPAM
KGERGEKGDTGSPGPPGLPGTPAFFTPHPRIPGEPGPKGDKGDQGMSGEPGLPGVPGEQG
VPGPAGVQGAKGEKGAQGEAGAPGETGLSGPAGPPGPRGLPGNVGVPGGPGLPGKAGEKG
EKGDPGKEGKVGLPGPPGEPGRAGEPGLPGKGKDGERGERGPPGLPGPFGHKGERGAPGL
PGQPGDRGVPGIGLAGPPGPAGPPGDKGSLGPRGVPGIPGPQGPPGQDGVPGNPGERGPP
GKPGSPPLLTPEDINLLVKDVCSECPPGPPGLPGIPGFKGDKGLRGPPGRDGQDGKMGIA
GPRGPPGPPGLDGPKGAKGDRGMTGEVGEKGEQGHPGMPGFSGAPGNPGPPGSDGVPGPI
GPAGNPGEVGKDGPPGPQGPPGLPGLPGIAGNDGKDGKPGSLGEPGKPGEQGLPGREGAR
GLPGFKGQRGDTGPPGPRGEPGVTGPAGREGPPGKDGDPGPIGPQGPRGLRGQPGKNGLP
GSAGEPGPAGIPGAKGNKGETGSPGLPGFIGPRGPPGEPGEKGPSGKEGAPGKQGAIGSK
GERGEPGFKGEKGPQGEKGPPGDPGIPGHKGHPGLMGPHGPPGDTGQVGPPGPPGQPGFP
GPRGEPPSLETLRRLIQEELSKQLDAKLPYILAQIQPAQVKASHGRPGPPGPPGKEGLPG
RTGPPGEPGRPGQTGSEGPPGPAGPKGERGAKGEKGDTGIGQRGEMGPPGIPGLPGEPGY
AKDGMPGPPGPQGEAGVPGLAGPQGPPGASGQCDPSQCAYYASLAARPSNVKGP
NT seq
4845 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgatgggaaggtgctgtatcctccatctcttggttcttctcacattcgtgttc
agcggggagagaaccgaggcacaaagagcaggttgcaaaagcgttcactatgaccttgtc
ttcctcttggatgcctcctccagcgttggaaaagaagattttgagaaagttcgtcagtgg
gtgtctaatttggtggaaacttttgagattgggccagacaaaacccgtgtaggtgtggtg
cgatacagcgatcgtccaaccacggagttcgacctgggaaagtacaaaacccgtgaggaa
atcaaagaggctgcacgaaagattcagtattatgggggtaacacgaacactggcgatgct
ctcaggtacatcaccacctacagtttttccaaagaagctggtgggagacttagtgatcga
actgttaaaaaggtggctatccttttgactgatggaaggagccaggattttgtcttggat
ccagccactgcagcccatcaggctgggattaggatttttgctgtgggtgttggagaagcc
ttaaaagaggaactcgatgagattgcttcagagcccaagtctgctcacgtgtttcatgtt
tctgattacaacgccattgataaaattcgggggaagctgaggaggcgtctctgtgagaat
gtcctgtgcccaaatgtccacgtggaaggagatcggttcaaacacaccaatgggggcact
gatgaaattccaggatttgacctgatggattcgttcagcgtgaagcagatttttggaatg
aaagaagatgggattcagagtgcttatgtacggcttggaagctttccggttgttcagaaa
actgaggatgtatttccacaaggcctgcctgatgaatatgcctttgtaactactttcaaa
ttccggaaggcttccaggaaagaagactggtatatctggcagattatagacaagtacggc
ataccacaggtctcgatccggctggatggagagaacaaagctgtggagtacaatgccgtt
ggactcaccaaggacgctgtcagggtggtcttccgaaacacacgggtcagtgacctgttt
gaccgcaactggcacaaaatcgccctcagcatccaggccaaggctgtctcgctgtacata
gactgcaagctggtgcagatgctgcccattgaagacagggagaacattgacattcaggga
aagactgtgattggcaaacgcttgtatgacagcgtccccattgattttgatcttcagcgg
atggtgatttactgtgattcccggcacgccgagctggagacctgctgcgacattccctct
ggaccatgccaggtcacggtcctgacagaagcacctcccctggaagtgaggcccactgtt
ggcagtgagcaagttggacatctgaagattttcaactgctcctgtcctcctggacaaaag
ggggagaggggtccacttggctttgaaggtcccaaaggtcaaaagggagaaagaggcatc
ccagggcttcctggactccgaggagaaaaaggagagtcaggcaaagcctatggcatagga
gaaaaaggagaaaagggtgaagaagggttccctggctttcctggactgaaaggggacaaa
ggagaaaaaggttccctgggctcacctggcccccctgggagggatggagcaaaaggagaa
gctggtgaaccaggacagccaggagcatttggactgcctgggccagcaggtccaaaggga
tccgagggaaaacagggtcctccaggcattaaaggctacgtaggtgcaccgggtctacaa
ggagaaagaggagaaaagggaacacgaggagacaagggagagagaggcctggatgggttc
cctggaaagccaggtgtggaggggaaacagggccctcctggcagccccggcccccctggt
gctagtgggaccaaaggagaaaagggtgaaccaggacttccaggattgcctggcacttta
gtgcatactgaaggcctaaaaggagaggaaggaaagcctgggccacgaggaccacaaggc
cagcctggacttcctggacctccaggacatcctggtctggaaggcaagcctggagtccct
ggtttgccaggtcaaaggggtaaaaagggagaaccaggattcccaggaatcaatggtctt
attggacctcagggtcctccagggccccctggcattgctggacccctgggaccacctgga
ccaccgggacttccaggagagattggagtttccggtaaaaccggaccacctggaccagct
gggctgcctggcaaagatggactcaatgggcttcctgggcttccaggtctaaagggagaa
cgaggggaaaagggtgaggaaggctttcctggaaaagctggccctaagggtgaacctggg
agccgtggccaacctggtgagcagggcgaagcaggttttcctggccctaggggcttaccg
ggactgagaggagaaaaaggagaccggggagaaaaaggaagagatggtctcccagcaatg
aaaggtgaaagaggagaaaagggtgacacaggttcccctggaccaccaggcttacctgga
acaccagccttcttcaccccacaccccaggattcctggtgaacctggaccaaaaggggac
aaaggagatcaaggaatgagtggagaacctggattacctggggtcccaggtgaacaaggt
gtgccaggacctgcaggagtacagggtgcaaagggggagaagggagcccaaggagaggct
ggagctcctggagagactggtttgagtggaccagcagggcccccaggtccaagaggcttg
ccaggaaatgtgggtgtgcctggaggccctggactcccaggaaaggcaggagaaaagggg
gaaaagggtgatcctggaaaagaaggaaaagtgggtttacctgggccacctggtgagcca
gggcgtgctggagagccaggtttgcctgggaagggtaaagatggagaaaggggggaaaga
ggaccaccaggcttgccaggaccctttggacataagggtgagaggggagctcctggcctc
cctggacagccaggagacagaggagtgccaggaattggcctggctggaccccctggccct
gcgggacccccaggagacaaagggtcactgggtccccgtggtgtacctggtatccctgga
ccacaagggcctcctggccaggatggtgtacctggaaatccaggggaaagaggacctcct
ggaaaacctggttccccacccctgctcactccagaggatataaatctcctagtgaaggat
gtgtgcagtgagtgccctcctggcccaccaggactgccaggcatcccaggtttcaaaggg
gataaaggtcttcgaggaccaccaggtagagatggccaggatgggaaaatggggattgct
ggtcccagaggtcctccaggcccacctgggctcgatggcccaaagggtgctaaaggagac
cgtggtatgactggagaagtaggagaaaaaggtgaacagggccaccctggaatgcctggc
ttctcaggggctcctggaaaccctggtccacctggatcagatggggtgccaggaccaata
ggacctgcaggaaaccccggagaggtgggcaaggatggtcccccaggtccacagggccca
ccagggctgcctggacttccaggaattgctgggaatgatggcaaagatggcaaaccagga
tctctgggggagccgggaaagcctggagaacaagggctcccaggccgggagggtgccaga
ggattaccgggtttcaaaggacagagaggagatacaggtccgccaggtccccggggggag
ccaggtgtgacaggtcctgctggtcgtgaggggccaccagggaaggatggtgatcctggt
cccataggaccacagggccctcgaggactccgagggcagccgggcaagaatggattgcct
ggatctgcaggagaacctggcccagcaggtatcccaggtgccaaaggaaataaaggagaa
acaggcagcccaggactccctggctttataggaccccgaggaccacctggagaacctgga
gaaaaaggtccttctggaaaagagggtgcaccagggaaacagggtgcaattggctccaaa
ggagagaggggcgagcctggtttcaaaggtgaaaaaggccctcaaggagaaaagggacct
ccaggtgaccccgggatacctggtcataagggtcatccaggactgatgggtccccatgga
cctccaggagacactgggcaagttggacctcctggtcctccaggacagccaggatttcca
ggaccaaggggagaacccccatctctagagactttgaggagactcatccaagaggagtta
tccaagcagcttgatgcaaagttgccctatatcctggctcagatacagcctgcacaggta
aaagcatcccatggcagaccaggacctcctggtccccctgggaaggaaggacttccagga
agaactggccctccgggagagcctggccgacctggacagactgggtctgaggggccacct
ggaccagctggtcccaaaggagaaagaggagcaaagggtgagaagggagacactggtatt
ggccagagaggggaaatgggtcctccaggaattccaggcctcccaggggagcctggttat
gccaaagatgggatgccaggacctcccggccctcaaggtgaagccggtgtgccgggtctg
gcaggtccccagggacccccaggagccagtggacagtgtgacccctctcagtgcgcttac
tatgcaagcctggctgcccggccctccaacgtcaaagggccatag
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