Corvus cornix (hooded crow): 104695401
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Entry
104695401 CDS
T03546
Symbol
COL17A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
ccw
Corvus cornix (hooded crow)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
104695401
NCBI-ProteinID:
XP_039410084
LinkDB
All DBs
Position
6:11788923..11839448
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AA seq
1536 aa
AA seq
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MDSVTRKTRQDGSEVTERLITETVTTRLTSLPPKGGSSSGLKTSSHTGGSGVEKRSYTHG
SSYVTSSGSGRLNSTSSSSSYRQAQSPSSTLTKSPGSTFERKTYVNRHATYEGSSSANSS
PEFPRKDFASASTRGRSQSRESEIRVRLQSASPSGRWTELDDVKRLLKGSRSASCSPTRS
SSSTLPIPKKAVVETKMVTESSQSVSGTYDTTVLNTALPSYMWSSTLPAGSSLGGYQSSS
SLIKAMSHSTGSVFGVPNNLAPTNHTLNAGLSSSSTVFGVQNNLSPSSSSVTQNATAASA
GQQQTYGMKNTSQSNTMASTGVSASAGGTVLSSQGDDILRKDCKFVLLEKEKAPAKEMEL
LVMTKDSGKVFSASNTGLNGGSFVEDTLKKEKQGFSSSYATDTGLKSDANGGLKSMPKRD
KETYAEIRGGDAGGAIGSAPSWCPCGSCCSWWKWLLGLLLAWLFLLGLLFGLIALAEEVR
KLKSRVEDLEKINGGLLAINQGNSKIEKDVSRVDFLHGISPSSTFPYENEESVWLMVKSR
LNKEIERGYFRGERGERGEKGDMGIQGPKGDRGLPGVPGIPGPIGHAGPEGPKGQKGSMG
EPGMEGPMGQRGREGLPGPRGEPGPPGFGEKGDRGAVGEPGPPGPPGPPGSAGLKGLMGS
PGPQGPPGPPGLQGFRGEAGLPGAKGEKGASGPPGPKGDQGEKGSRGLTGEQGSRGIPGP
PGEPGAKGPVGQAGRDGQPGEKGEPGLMGMPGARGPPGPTGDAGEPGLTGPQGPPGIPGN
PGRPGAKGEPGAPGKVVSAEGSSTITLPGPPGPPGPPGPTGPPGVPGPVGPAGLPGQQGP
RGEKGSPGEAVIETIRTEVSSLASQMLGDLQGRAGPPGPPGPPGESVQGPPGPRGPPGEG
LPGPPGPPGSSMSTSEAFFTGPPGPPGPPGPKGDQGERGPRGFTGEPGNPGISAFSSHGE
RVTIQGPPGPPGPPGPKGDAGVPGAPGIPGASRGGSRQIQGPPGPPGPPGPPGPSGGSSQ
EIQQYITDYLKSDNIRHYLTGAQGPPGPPGPPGLITTADGVTLDYAELATRVMSYMTSSS
GRYESFSSSVSTTSILYQELLDLLQREEIRQYLIGPRGPPGPPGPGGDGMSLSLDYDELT
RRFISYLSNSGMSIGLPGPPGPPGTPGISYSDLIAYLRNSEFSGVVGPPGPAGPPGPPGI
PGSPGTSLEDVSAYLQNVGYSSLSGVRGPPGPPGPPGPPGFSGTGLLSYADITHSDEFRS
ELIQYLKSDEIRSYISGPPGPPGPRGPPGPKGDSGLVSGSMSSSYQGLRASEHLHGGSLG
AEGSHRGSLGSGSSYGSSTSSMSSYHASVGSDGTYDASMGTDGSFDGLLTEEESHRRSAA
SSRSFSNSFSGSLDYDKLALRVSESLQSRGILQDLMAYTAQGPAGPPGPPGPPGISKVFA
AYGNVTADLMDFFRTHGAIQGPAGEKGERGYPGPKGDPGPMGPPGRHGHGDQKERRERKV
NKRMLAEEKEEALVFKERGSSVLHRAAFPAACRELA
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtaacaaggaaaacgaggcaagatggatcagaagttactgaaagacttatt
acagagactgtaaccacaagactgacatccttgccacccaaaggagggagcagcagtggg
ctcaaaacatcatcccacactggagggagtggagtggaaaagcggtcgtacacccatgga
agcagctatgtgacctcaagtggaagtggtagattgaattcaacatcatcatcctccagc
tacagacaagctcagtctcccagctctactctcaccaaatcacctggctcaacatttgaa
agaaaaacctatgtcaaccgccatgcaacatatgaagggagctccagtgccaactcttct
cctgagtttcccaggaaagattttgcatctgcctctacaagggggagaagccaaagtcga
gagagtgaaatacgagtccgactgcagagcgcatctccctctggcagatggacagagttg
gatgatgtgaaacgtttgctgaaaggaagtcgatctgccagctgcagccctactcggtca
tcatccagtacactcccgataccaaaaaaggctgtggtggagacgaagatggtcactgag
agctctcagtcagtgtcggggacatatgacacaactgtactgaatactgccctcccttca
tacatgtggtcctccactctgcctgctggctcttcccttggtggataccaaagcagctct
tccttgatcaaagccatgtctcactctacaggatcagtttttggtgttccaaataacctg
gctcccaccaatcataccctgaacgcgggcctgagctcttcctctacagtgtttggagtt
caaaacaacctgtctccaagctcttcatctgtgacccagaatgctacagcagcctctgca
ggtcagcaacaaacatatgggatgaagaacacttctcagagcaacaccatggcaagtact
ggtgtctctgcctcagcaggaggaactgttttgagctcccagggagatgacattctgcgc
aaagactgcaagttcgtgctgctggagaaggagaaggcaccagcaaaggagatggaactc
ttggtcatgacaaaggacagtggcaaagtctttagtgcctctaacactgggcttaatgga
gggtcttttgtagaagacaccttgaagaaagagaagcagggattttcctcctcttatgct
acagatactggcctaaaatcagatgcaaatggagggctgaaatccatgccaaaaagggac
aaagaaacttatgcagaaatacgaggtggtgatgcagggggtgccattggatcagcacca
tcctggtgtccctgtggttcctgctgtagctggtggaaatggctcctgggtttgcttcta
gcatggttgtttctcctcggcttgctttttggactcattgctctggcggaagaagtgaga
aaactgaaatctcgtgtggaagacctggaaaaaatcaatggtggcctcctggcaattaac
caagggaattcaaaaatagaaaaggatgtttcaagagtagactttcttcatggtatctca
ccctcttcgaccttcccatatgaaaatgaagagtcagtctggttgatggtgaagagcaga
ctgaataaggaaatagaacgaggctacttccgaggggagagaggagaacgtggtgagaaa
ggtgacatgggaatacaaggtcccaaaggtgaccgaggacttcctggtgtcccaggcatt
cctggtccaattgggcatgcaggaccagaaggaccgaaaggacagaagggcagcatgggt
gagcctggcatggaaggtcccatgggacaaagaggtcgagaagggctaccagggcctcga
ggggagccaggaccacctgggtttggagaaaaaggagacagaggtgctgttggtgagcca
ggtcctccagggccaccaggacccccaggttctgctggcctaaaaggtctgatgggttct
ccaggcccacaaggtcctccaggtcctcctggcctacaaggatttagaggtgaagcagga
ctcccaggtgctaaaggtgaaaaaggagccagtggaccccctggacccaaaggtgatcag
ggtgagaagggttctcgtggattgacaggtgaacaagggtcaagaggaatacctggacct
ccaggagagccaggggctaaaggacctgtaggacaagctggtcgtgatggacagccaggt
gaaaaaggtgaaccaggtcttatgggaatgccaggtgccagaggccctccaggacccact
ggagatgccggagagccaggtcttacaggaccccaaggaccaccaggaattccaggcaac
ccaggccgaccaggggctaaaggagaacccggagctccaggaaaagtcgtaagtgcagag
ggttcatcaactattactctgccaggcccaccaggtcccccaggcccacctggccccact
ggtcccccaggtgttccaggtcctgttggaccagctggtctccctggacagcaaggtcca
cggggtgagaaaggatccccaggtgaagctgtgatagaaaccatcagaacagaagtctca
tcgttagcatctcaaatgctgggagatttgcaagggcgagcaggaccaccaggtccccct
ggaccaccaggtgaatctgtgcaaggaccccctggacctcgtggtcccccaggagaagga
ttgccaggacctccgggcccaccaggatcatccatgtccacctcagaagcattcttcaca
ggcccaccaggtccaccaggaccaccaggcccgaagggagaccaaggtgaacgaggtcca
cggggattcacaggagaaccgggtaatcctggcatttcagcattctcctcccacggtgaa
agagtcaccatacaaggacccccaggcccaccaggcccgcctggaccaaaaggtgatgca
ggtgtcccaggcgcacctggcatcccaggagcatctcgaggtggatccagacaaattcag
ggacccccaggacctcctgggccacccggtcctcccggcccaagtggaggttcatctcaa
gagattcagcagtatatcactgactacctgaagagtgacaacatcagacattatttgact
ggtgcccaaggcccaccaggccctccaggcccacctggacttatcaccactgcagatggg
gtgaccttggattatgcagagctggctacccgtgtcatgagctatatgacaagctcttca
ggtcgctatgagtcattttctagctcagtatcaactacatccattttgtaccaagaactt
ctggatctgctgcagagagaagaaattcgtcagtatctcattggacctcggggcccaccg
ggacctcctgggccaggaggagatggaatgtctctgtcactggattatgatgagctgacc
aggaggtttatcagctacttgtcaaattctgggatgagcattggactccctggaccacct
gggcctccagggacacctggtatatcttacagtgacctgatagcgtacctgcgaaactct
gaattcagtggtgttgttggaccccctggtcctgcagggcccccgggacctccagggatc
cctggatcaccaggcacctctcttgaggatgtctctgcctacctacaaaatgttggatac
tcttccctgtctggagtccggggcccacctggccctcctggccctccaggaccaccaggc
ttctctggaactggccttctgtcctatgctgacatcacccacagcgacgagttcaggagt
gagctgatccagtacctgaagagtgatgaaattcgaagctacatctcaggaccccctggg
ccccctgggccacggggaccaccaggacccaaaggagacagtggcttggtgtctgggtct
atgtcttcctcataccaagggttacgagcttctgagcacttgcatggagggtcccttggt
gctgagggctcccacaggggctcactgggctcaggcagctcgtatggcagctccacaagc
agcatgtcctcttaccacgcctcagtgggcagcgatggcacttacgatgcctccatgggc
actgatgggtccttcgatgggctgctgacagaggaggaatcacacaggagatcagcagcg
tcgagcagatccttcagcaactccttctctggttccctggattacgacaagctggcactc
cgtgtgtcagagagcctgcagagccgaggtattctccaggacctgatggcttacactgca
cagggacccgcaggtcccccaggccctcctggtccccctggcatcagcaaggtttttgca
gcctatggcaatgtcaccgcagacctcatggacttctttagaacacatggtgccatccag
gggccagccggtgaaaagggggagaggggttatcctggacccaaaggtgaccctgggcca
atgggcccaccaggacgacatgggcacggggaccaaaaggagagaagggagagaaaggtg
aacaagcgtatgttggcagaagaaaaagaagaagcgttggtgtttaaggaaagaggtagc
tcagttctgcacagggcagcgttcccagcagcctgtagagaattagcctga
DBGET
integrated database retrieval system
