Corvus cornix (hooded crow): 104697776
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Entry
104697776 CDS
T03546
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104697776 (DHX8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104697776 (DHX8)
Enzymes [BR:
ccw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104697776 (DHX8)
Spliceosome [BR:
ccw03041
]
Complex C
Other components
Step II factors
104697776 (DHX8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
PhoH
AAA_16
TsaE
Sigma54_activ_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
104697776
NCBI-ProteinID:
XP_039421587
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All DBs
Position
27:1423367..1437421
Genome browser
AA seq
1192 aa
AA seq
DB search
MAELAAADELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKNTTFDTFKAILLK
NGAEFTDSLISNLLRLIQTMRPPPKPSTSKEAAVKPKSEKEKLRELYPALCRPDNPNIRN
MLDEDDVKVAADALKELEALMPSADRQGKQRSSDHRAKKRKRSRSRSRDRKRRHRSRSRS
RSRTWDKNRGKSRYRSRSRSWSPSKDRRDREKYSEKSHERWRDKHIDRPPAEEPSIGDIY
NGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG
SKTSLSMKDVDQDTGEDLNPNRRRNLVGEINEETSMRNPDRPSHLSLVNAPEVEDDSLER
KRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPF
LRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNTH
WVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESLPIF
RLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAK
RVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAH
ERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILY
TKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELI
ILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSK
TGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLAST
VLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPM
LCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAV
YNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAIC
SGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTI
DPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctggcggcggcggacgagcttgccaagctcgagtatctgtcgctggtctcc
aaggtctgcaccgagctcgacaatcacctgggcatcaacgacaaggacctggccgagttt
gtgataagccttgccgagaaaaataccacgtttgacacatttaaagcaattcttctgaag
aatggtgctgagttcactgattctctcattagtaacttgctacgtctcatacagacaatg
cggcctccaccaaaaccttctacgagcaaagaggcagctgtcaaacccaaatcagagaaa
gaaaagttgagggaattgtatccagccctttgcaggccagacaaccccaacatcaggaat
atgctggatgaagatgatgtgaaagtggcagctgacgccctgaaagagctcgaagctctg
atgccgagtgcagacaggcagggcaagcagaggagcagcgaccatcgggcgaagaaaagg
aagaggagccgaagtcgtagcagggacaggaagcgaaggcacaggtctcgctccaggtct
cgttccaggacttgggataagaacagggggaaatccagataccggtcaaggagcagaagt
tggagtcccagcaaggaccgcagggatcgagaaaagtacagtgagaagagccatgagagg
tggagagacaagcacatagaccgtccaccagctgaggagccttccattggagacatctac
aacggcaaagtcacgagtataatgcagtttggatgctttgtgcagctggaaggactgagg
aaacgttgggaaggcttggtccacatctcagagctgcgaagagaaggacgggttgccaat
gttgctgatgttgtgagcaaaggacaaagagtgaaagtcaaagtgttatcctttacagga
tccaaaaccagcctgagcatgaaggatgttgatcaagacactggagaagacttgaaccca
aaccgcagaaggaacctggttggagaaatcaatgaggagacctctatgaggaacccggac
agacccagtcacttgtccctggtgaacgccccggaggtggaggacgacagcctggaacgg
aaacgcctcactcgcatttcagacccagagaaatgggaaataaaacagatgattgcagct
aatgtgctttccaaggaagagtttcctgactttgatgaggagactgggattcttcctaaa
gtcgatgatgaagaagatgaagatcttgagattgagctagttgaagaagagccaccgttt
cttcgaggtcacactaaacagagcatggatatgagtcccattaaaatagtaaagaatcca
gatggttccttgtcccaggctgcaatgatgcaaagtgctttagctaaagagaggcgagaa
cttaaacaagcccagagagaagcagagatggattctatccccatgggcctcaacacgcac
tgggtggatcctctccctgatgtggatggaagacaaatagctgcaaacatgcgaggtatt
gggatgatgccaaatgatatcccagagtggaagaaacatgcatttggtggcaacaaagct
tcttatggtaagaagacccagctttccatcattgaacagagagagagtctcccaatcttc
agactgaaggagcagctgatacaagctgtgcatgacaaccagattctgattgttattgga
gagacaggatctgggaaaacaacacagattacccaatacctggctgaggcaggatacacc
tcaagaggaaagattggatgtactcagcctcgcagagtggctgccatgtctgttgcaaag
agggtgtcagaggaatttggttgctgcttgggacaagaggttggctacaccattcggttt
gaagactgcaccagccctgaaactgtcatcaaatacatgacagatgggatgttactgagg
gagtgcttgatagatccagatctgacccagtatgccattatcatgctggatgaagcccat
gagaggaccatacacacagatgtgctctttgggctcctgaagaagacagtgcagaagcgg
caggacatgaagctgatagtgacgtcagcaacgctggatgctgtgaagttctctcagtat
ttctatgaagcaccaatcttcacaattcctggcagaacatacccagtagaaattctgtac
acaaaagagccagagacagattatttggatgccagtctgattacagtaatgcagatccat
ttaacagagccaccaggtgacattttggtctttctaactggccaggaagagattgacact
gcctgtgaaatcctctatgaaaggatgaaatctctaggacctgatgttccagagttaatt
atcctaccagtatattcagctttacccagtgaaatgcaaaccaggatctttgacccagcc
ccaccagggagcagaaaggttgtcattgccaccaacattgcagagacatctttgactatt
gatgggatatattatgtggtcgatcctggctttgtgaagcagaaagtttataactccaag
actggaattgaccagctggtggtgacaccgatttcacaggctcaagccaagcagcgggca
ggaagggctgggagaacaggcccaggaaaatgctacaggttatacacagaacgtgcgtat
cgagatgagatgctaaccaccaatgtgcctgaaatccagagaacaaatttggccagtaca
gtgctttccctgaaggctatgggcatcaacgatttgctgtcttttgacttcatggatgct
ccccccatggaaactctcataactgccatggagcagctctacaccctgggagctctggat
gatgagggactgctcactcgacttgggcgcaggatggcagaattccccttggagcctatg
ctgtgtaagatgttgatcatgtctgtacatctgggatgcagcgaggagatgttgacgatt
gtctccatgctgtcagtgcagaatgtattctacaggcccaaggataaacaagcacttgct
gatcaaaagaaagcaaagttccatcaaacagaaggtgaccacctcaccctgctggctgtg
tacaattcctggaagaataataaattttcaaatccctggtgctatgaaaattttatccag
gcccgatccttacgccgggcacaggacattcgcaagcagatgttgggcattatggacagg
cataagctggatgtggtatcctgtgggaaggcaacagttcgtgtccagaaggccatttgt
agtggtttcttccggaatgcagcaaagaaggatccccaggaaggttatcggacactcatt
gaccagcaggtggtctatatccacccatccagtgccctcttcaacaggcagccagaatgg
gtggtgtatcacgaactggtgctgaccaccaaggaatacatgcgtgaggtgaccaccatc
gatcctcgctggctggtggagtttgcaccagctttcttcaaggtttctgatccaaccaag
ctgagcaagcagaagaagcagcagcggctggagcccctctacaaccgctacgaggagccc
aatgcctggaggatatcgcgcgcgttccggcggcgatga
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