Corvus cornix (hooded crow): 120411208
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Entry
120411208 CDS
T03546
Symbol
HDAC5
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 5
KO
K11406
histone deacetylase 4/5 [EC:
3.5.1.98
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
120411208 (HDAC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccw03036
]
120411208 (HDAC5)
Enzymes [BR:
ccw01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
120411208 (HDAC5)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
120411208 (HDAC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Motif
Other DBs
NCBI-GeneID:
120411208
NCBI-ProteinID:
XP_039420576
LinkDB
All DBs
Position
23:complement(4375707..4396091)
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AA seq
1040 aa
AA seq
DB search
MDPQSDTEGGSGREPPLELLPRVPLHASLPAPGPEGPEGPGPEAGVDAGLAAARERQLQR
ELVALKQQQQLQKQLLFAEFQKQHEHLTRQHQVQLQKHLKQQQEALAARRQQELEQQRQR
ERQELEQQRLEQLQSLRPKDRGRDSAIASTEVKLKLQEFLLSKTKEPGPGPPNHSLPQHP
KCWAHHTSLDQSSPPRLAARGPPIYKLPLLGTYDGRDDFPLRKTASEPNLKVRSRLKQKV
AERRSSPLLRRRDGSVLSAFRKRHVEITVSSVCSSAPGSGPSSPNSSHGAHNGLAASVPN
IHSELLPQPRALALDGAQLSLYTSPSLPNLSLGLQATVTVTSAHLPASPKLSPQAEGERP
GVPPGVSPLRPGAALTGKFLSTSSIPGCLLGVALDGDAPAGPPSLLQHVLLLEQARQQST
LIAVPLHGQSPLVTGERGGVPVXNKLPRHRPLSRTQSSPLPQSPQALPHGPLQHHFLDKQ
QVQLGKLLPKGGELARQPPTHPEETEEELTEQQSPPPVRGAPRAPLGPPLALVSPEPGDP
PEQPQDPEGCQEPGDSGDEAEATGDPDVTELGVTYKQVYPEAPLQLFPAPPLGVLALPHP
ALARTQSSPASVKPPPPEGPPKHLFTTGVVYDTFMLKHQCTCGNTTIHPEHAGRIQSIWS
RLQETGLLGKCERIRGRKATLEEIQTVHSEHHALLYGTSPLNRQKLDSKKLLGPITPKTY
TVLPCGGIGVDSDTVWNELHSSSAVRTAVGCLLELAFKVAAGEVKNGFAVIRPPGHHAEE
STAMGFCFFNSVAISAKLLQQRLSVGRILIVDWDIHHGNGTQQAFYSDPHVLYISLHRYD
DGNFFPGSGAPEEVGSGLGVGYNINIAWTGGVDPPIGDVEYLTAFRTVVMPIANEFSPDV
VLVSAGFDAVEGHLSPLGGYSVTAKCFGHLTKQLMMLAGGRVVLALEGGHDLTAICDASE
ACVTALLGLELEPLDPALLQQKPNVNAVATLEKVIEIQSRHWGCVRRFAATVGRSLLEAQ
RGDTEEAETVTAMALLSVGA
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggacccccagagcgacacagagggggggtccggccgtgagcccccgctggagctcctg
ccccgtgtcccgctgcacgcttccctgcccgccccagggccggaggggccggaggggccg
gggccggaggcgggggtggacgcggggctggcggcggcgcgggagcggcagctgcagcgg
gagctggtggccctgaagcagcagcagcagctccagaagcagctgctcttcgccgagttc
cagaagcagcacgagcacctcacccgccagcaccaggtccagctgcagaagcacctcaag
cagcagcaggaggccctggccgcccgccggcagcaggagctggagcagcagcggcagcgg
gagcggcaggagctggagcagcagcgcctggagcagctccagagcctgcgccccaaggac
cggggccgtgacagtgccattgccagcacggaggtgaagctgaagctccaggagttcctg
ctcagcaagacgaaggagccgggccctggcccccccaaccattccctcccccagcacccc
aaatgttgggctcaccacacctcgttggaccagagttccccccccagactggcagcccgg
ggaccccccatctacaagctccccctcctcggcacctacgacggccgggatgatttcccg
ctccggaaaacagcctcggagcccaacctgaaggtgcggtcgcggctgaagcagaaggtg
gcggagcggaggagcagccccctcctgcggcgccgcgacggctccgtgctcagcgccttc
cgcaagcgccacgtcgagatcaccgtgtcgtcggtttgcagcagcgcccccgggtcgggg
cccagctcccccaacagctcccacggtgcccacaacggcctggccgcctctgtccccaac
atccacagtgagctcctgccccagccccgcgccctggccctggacggggcccagctcagc
ctctacacgtccccgtcgctgcccaacctgtccctggggctgcaggccactgtcaccgtc
accagcgcccacctccccgcgtcccccaagctgtcgccgcaggcggagggcgagcggccg
ggggtgcccccgggggtgtccccgctgcgccccggggccgccctcaccgggaagttcctg
agcacatcctcgatcccggggtgcctgctgggggtggccctggacggagacgccccggcc
gggcccccgtcgctgctgcagcacgtgctgctgctggagcaggcgcggcagcagagcacc
ctcattgctgtgcccctgcacgggcagtccccgctggtgacgggggagcgcgggggggtc
cccgtgnggaacaaactgccgcgacaccggcccctgagccgcacccagtcgtccccgctg
ccccagagcccccaggccctgccccacggccccctccagcaccacttcctcgacaagcag
caggtccagctgggcaagctgctccccaaggggggggagctggcccggcagccccccacc
caccccgaggagacagaggaggagctgacggagcagcaatcgccccccccggtgagaggg
gccccccgggcccccctcggcccccccctcgccctcgtgtccccagagcccggggacccc
ccagagcagccgcaggaccccgagggctgccaggagccgggtgacagcggggacgaggcc
gaggccaccggggaccccgacgtcaccgagctgggggtcacctacaagcaggtgtacccc
gaggcgccgctgcagctcttccccgcgccccccctgggggtcctggctctgccccacccc
gccctcgcccgaacccaatcgtcccctgccagcgtcaaaccccccccgcccgaggggccc
cccaagcacctcttcaccacaggcgtggtgtacgacacgttcatgctgaagcaccagtgc
acctgtgggaacaccaccatccaccccgagcacgccgggcgcatccagagcatctggtcc
cggctgcaggagacggggctgctcgggaagtgcgagcggatccggggcaggaaggcgacg
ctggaggagatccagacggtgcactcggagcaccacgcgctgctctacggcaccagcccc
ctgaaccgccagaagctggacagcaagaagctgctgggtcccatcacgccgaagacgtac
acggtgctgccatgcgggggcatcggggtggacagtgacacggtgtggaacgagctgcac
tcgtccagcgcggtgcgcacggccgtgggctgcctgctcgagctggccttcaaggtggcc
gcgggtgaggtcaagaatggcttcgccgtcatccgccccccaggccaccacgccgaggag
tccacggccatgggcttctgcttcttcaactcggtggccatctcggccaagctgctgcag
cagcggctcagcgtgggcaggatcctcatcgtggactgggacatccaccacgggaacggg
acccagcaggccttttacagcgacccccacgtgctctacatctccctgcaccgctacgat
gatggcaacttcttcccgggcagcggggcccccgaggaggtgggcagcgggctgggcgtg
ggctacaacatcaacatcgcctggaccggcggcgtggaccccccgatcggggacgtggag
tacctgacagccttcaggacggtggtgatgcccatcgccaacgagttctccccggacgtg
gtgctggtctccgccggcttcgacgccgtcgagggccacctgtccccgcttggtggctac
tctgtcaccgccaagtgtttcgggcacctgacgaagcagctgatgatgctggcggggggc
cgggtggtgctggcgctggagggggggcacgacctgacggccatctgcgacgcctccgag
gcctgcgtcaccgccctgctcggcctcgagctggagcccctggacccggccctcctgcag
cagaagcccaacgtgaacgcggtggccacgctggagaaggtcatcgagatccagagccgg
cactggggctgtgtccggcgcttcgcggccaccgtgggccggtccctgctggaggcgcag
cgcggggacaccgaggaggccgagacggtgacagccatggccctgctgtcggtgggcgcc
tga
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