Corynebacterium cyclohexanicum: SCMU_06830
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Entry
SCMU_06830 CDS
T07918
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ccyc
Corynebacterium cyclohexanicum
Pathway
ccyc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SCMU_06830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccyc03400
]
SCMU_06830
Enzymes [BR:
ccyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SCMU_06830
DNA repair and recombination proteins [BR:
ccyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SCMU_06830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BCT74841
LinkDB
All DBs
Position
complement(688673..690856)
Genome browser
AA seq
727 aa
AA seq
DB search
MADSEILHVDGPDGAREVKLSSPDKVLWPGVEGQGPLTKRDLAHYLISVATPFLRLNGDR
PMTLQRFPEGIDGEEFFSKRPPRGAPPYLRTVTCTYPSHRRHDQLVFDEAAALAWAAQMG
TITFHPWPVRTANLDNPDELRIDLDPQPGRAFGDAVVAAQALREVMAEAGLMAYAKTSGN
RGVHVYARIRPTHEFQAVRHGVIGIARELERRMPDLVTTSWWKEERGERVFVDFNQANRD
RTIAAAYSPRPLPHAPVSTPLTWDELAEADPRDLTVRTVPALLASRDCPWSDIDGTAGDV
GGALALWEKDLERGLGELNFPPDYPKMPGEPPRVPPSKRKADRADAEYMAPKAERDAEWG
TAIAPPYGPMLAKPLKKLPEGDYLYEPKWDGFRSIVWRSGDRVEIGSRNSLPMTRYFPEL
VEAFVANLPDHSVIDGEIILIDPESGDRLNFDALQQRIHPAASRIAKLAAATPASFVAFD
LLALGQVNYVERPFRERRAALEEALKDAAPPVYLTQATGDPAVALEWFSTFEGAGLDGVI
AKPLGEPYAEDKRVMAKLKHERTADCVLAGYRLYKDEPDAIGSLLLGLYDGEGLLHSVGV
IGAFPMARRRELFAELQPLVTTFDGHPWAWAQPADVTPDNRDQSIPRTPTAAAHSRWNAN
KDLSFVPLRPERVVEVRYDHMEGDRFRHTAQWVRWREDRQPSSCTYDQLEEPVSYDLSSV
LAGERPA
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggcggattccgagatcctgcacgtggacggccccgacggcgcgcgggaggtcaagctg
agcagccccgacaaggtgctgtggccgggcgtcgaggggcagggccccctcacgaagcgc
gatctggcccactatctgatctcggtggccacgccgttcctgcgcctcaacggcgaccgg
cccatgacgctgcagcgtttcccggaggggatcgacggggaggagttcttctcgaagcgg
ccgccgcggggtgcgcccccctatctccggacggtgacgtgcacgtacccgtcacatcgg
cgccacgaccagctcgtgttcgacgaggccgccgcgctcgcgtgggcggcccagatgggg
accatcacgttccacccgtggccggttcgcacggccaatctggacaacccggacgagctg
cgcatcgacttggacccccagcccggccgggcgttcggcgacgccgtcgtcgcggcccag
gccctgagggaggtcatggcggaggccgggctcatggcctatgcgaagacgtccggcaac
cgcggcgtccacgtctacgcgcgcatccggcccacgcacgagttccaggccgtgcggcac
ggcgtcatcgggatcgcacgcgagctcgagcgccgtatgccggacctggtcacgacgtcc
tggtggaaggaggagcgcggcgagcgggttttcgtggacttcaaccaggccaaccgagac
cgcacgatcgccgccgcctactcccctcggcccctgccccacgcgcccgtctcgaccccg
ctgacctgggacgagctggccgaggccgacccgcgcgacctcaccgtccgcacggtcccc
gcgctcttggcctcgcgggactgcccgtggtcggacatcgacggcacggctggagatgtg
ggcggcgcgctcgccctgtgggagaaggacctcgagcgcgggctcggcgagctcaacttc
ccgcccgactaccccaagatgcccggcgaaccgccgcgggtcccgccgagcaagcgcaag
gccgacagggccgacgcggagtacatggccccgaaggccgagcgggacgccgagtggggc
acggccatcgcgccgccgtacggaccgatgctcgcaaagcccctcaagaagctgcccgag
ggcgactacctgtacgagcccaagtgggacggcttccgctcgatcgtgtggcggtccggc
gaccgggtcgagatcgggtcccgcaactcacttcccatgacccgctatttcccggaactc
gtcgaggccttcgtggccaaccttcccgaccactcggtcatcgacggcgagatcatcctc
atcgatcccgaatccggcgaccggctcaacttcgacgccctccagcagcgcatccacccg
gcggcctcgcggatcgcgaagctcgccgcggccaccccggcgagcttcgtcgccttcgac
ctgctcgcgctcggacaggtcaactacgtcgagcgtcccttccgggaacggcgcgcggcc
ctcgaggaggcgctcaaggacgccgcaccgccggtctacctgacgcaggcgaccggggac
cccgccgtcgccctcgagtggttcagcacgttcgagggcgctggcttggacggcgtcatc
gcgaagccgctcggcgagccctacgccgaggacaagcgggtcatggccaagctcaagcac
gagcggaccgcggactgcgtgctcgcggggtaccgcctgtacaaggacgaacccgacgcc
atcgggtccctgctgctcggcctctatgacggagaaggcctgctccactccgtgggggtc
atcggtgcgttcccgatggcccgccgccgcgagctcttcgcggagctgcagccgctcgtc
acgacgttcgacgggcacccgtgggcctgggcgcagcccgccgacgtgacaccggacaac
cgtgaccagtcgatcccccgcacgccgacggccgcggcccactcccgctggaacgcgaac
aaggatctctccttcgtgccgcttcggccggagcgcgtcgtcgaggtgcgctacgaccac
atggaaggcgaccgattccggcacaccgcgcaatgggtccggtggcgcgaggaccgccag
ccgtcgtcgtgcacctatgaccagctcgaggaaccggtcagctacgacctctcctcggtc
ctggccggggagaggcccgcgtag
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