Caldicellulosiruptor danielii: SOJ16_001585
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Entry
SOJ16_001585 CDS
T09647
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdan
Caldicellulosiruptor danielii
Pathway
cdan03030
DNA replication
cdan03410
Base excision repair
cdan03420
Nucleotide excision repair
cdan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOJ16_001585 (ligA)
03410 Base excision repair
SOJ16_001585 (ligA)
03420 Nucleotide excision repair
SOJ16_001585 (ligA)
03430 Mismatch repair
SOJ16_001585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdan03032
]
SOJ16_001585 (ligA)
03400 DNA repair and recombination proteins [BR:
cdan03400
]
SOJ16_001585 (ligA)
Enzymes [BR:
cdan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SOJ16_001585 (ligA)
DNA replication proteins [BR:
cdan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SOJ16_001585 (ligA)
DNA repair and recombination proteins [BR:
cdan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SOJ16_001585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SOJ16_001585 (ligA)
MMR (mismatch excision repair)
DNA ligase
SOJ16_001585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SOJ16_001585 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
PASTA
RUBY_RBDX
BRCT_2
HHH
RTT107_BRCT_5
HHH_8
PADR1_Zn_ribbon
GFRP
Motif
Other DBs
NCBI-ProteinID:
WPX07756
LinkDB
All DBs
Position
complement(1636759..1638780)
Genome browser
AA seq
673 aa
AA seq
DB search
MSEFIKKRIRELIDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPT
QRVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTLDFDYVVEYKIDGLS
VALEYESGLFVRGATRGDGNVGEDVTENLKTIRSIPLKLKEDISIVVRGEVFMPKDEFIR
LNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNVQWCEKELETHKEALEF
LRHLGFKVSPDYVVCRNIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAGETAK
SPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNMDYIR
QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPRKCPVCGADVIKFEDEVAYR
CTGVECPAKSYRLILHFVSRDAMDIAGMGEMIVKTLFERGLIKTPADIYYLKFEDLVNLE
RFGVKSTNNLLKAIQVSKNRPLDRLIYALGIRHIGQKAAKTLAEHISSIDDLFTISEEQL
LSLPDFGEKMAKSVVTFFRQEQTRHLIERLKAAGVNTVSEKKVKSDILKGYTFVLTGALS
KYSRNEAKEILENLGAKVTESVSKKTTAVIVGQDPGSKFTKAQQLGVRILNEEDFEKLVK
ALSREEVEKILME
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtttataaaaaagagaataagagaacttattgatcttatcaattatcatgat
tataaatactatgttgaagataatccagaaattagcgactatgaatatgatatgttatac
cgtgagcttgttgaacttgaaaaacagtaccctgaatacgtatttccagattcacctaca
caaagagttggtggaaaagtaaaagagggttttaaagaggttgtacatcgtgtgcctctt
ctttcgctttcaaacgtgttcaatgaaggagaactttacgattttgacagaagactaaag
gaacttcttggaacgcttgattttgactatgttgttgaatacaagattgatgggttatct
gttgcgcttgagtatgaaagtggtctttttgtcagaggtgcaacccgtggagatggcaat
gtaggcgaggatgtcacggaaaacttaaagactataaggtctattccgctaaaattaaaa
gaggacatctccattgttgttcgtggagaggtattcatgccaaaggacgagtttataagg
ctcaaccaggaaagggaagagaatgaagagcctctttttgcaaatccacgaaatgcagcg
gcaggatcgcttcgtcagcttgacccaagaatcacagcacaaagaaagcttgatatattt
gtcttcaatgtccagtggtgcgaaaaagagcttgaaacacataaagaggcgcttgagttt
ttaaggcatctgggttttaaagtttcacctgactatgttgtttgcaggaatattaaagaa
gcgtttgaagctataaagaagattgaggaaaaaagggacttgcttccttttgagatagac
ggtgctgttgtgaagctaaaccagctaagactgagagatgttgcgggggagactgcaaag
tcacccagatgggctgttgcttataaatttccgcctgagaaaaaggagacaaaacttttg
gatattgaggtcaatgttggtcgaacaggcatccttacaccaactgcaattttggaacct
gtgaggatttcaggttctgttgtttcaagggcaactcttcataacatggactatataaga
caaaaagatatcagaattggcgacacagtaatagtgcaaaaagctgctgagattattcct
gaggttgttgaggttgtgttttcaaaacgaacggggcaggagagaatttttgaaatgcca
agaaaatgtcctgtttgcggagcggatgttataaaatttgaagatgaggttgcttacagg
tgcacaggtgttgaatgtcctgctaaaagctacaggttaattttacactttgtttcgcgt
gatgcgatggacattgccggcatgggcgaaatgatagtaaaaaccttgtttgaaagaggt
cttataaagactcctgctgatatttattatttaaagttcgaagacttggtaaatttggag
cgttttggtgtaaagtccacgaataatttgttgaaagctatacaggtatctaaaaacaga
ccattagacaggctcatatatgcgcttgggataaggcacattggacaaaaagctgcaaaa
actcttgctgagcatatatcctctatagatgacctttttactatttcagaagaacaactt
ttgagtcttccagactttggtgagaagatggcaaaaagcgttgtaacatttttcaggcag
gagcagacaagacacctaatagaaaggttgaaagctgctggtgtcaatacagtttctgaa
aagaaagtaaaatcggatattttaaaaggctacacatttgttttgacaggagctttgtcg
aagtatagcagaaatgaggcaaaagagattttagaaaatcttggtgcaaaagtaactgaa
agtgtttctaaaaagacaacagctgtgattgtaggtcaggaccccggtagcaaattcaca
aaggctcagcagcttggtgttagaattttgaacgaagaggattttgaaaaattagtaaaa
gctttatcccgtgaggaagtagaaaagattttaatggagtga
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