Cryptococcus deuterogattii: CNBG_3179
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Entry
CNBG_3179 CDS
T09796
Name
(RefSeq) uncharacterized protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CNBG_3179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdeu03400
]
CNBG_3179
Enzymes [BR:
cdeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CNBG_3179
DNA repair and recombination proteins [BR:
cdeu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CNBG_3179
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
PTCB-BRCT
RTT107_BRCT_5
Neuralized
Motif
Other DBs
NCBI-GeneID:
88179479
NCBI-ProteinID:
XP_062883159
LinkDB
All DBs
Position
1:708412..713217
Genome browser
AA seq
1080 aa
AA seq
DB search
MAVHAPYYHAPPPTQEINGEKPTLAAATTLERPTDCINRGQYPAFYIICGYLNRLRADAP
HKKYELLMRIFGNWREKVGPDLYPLIRLLLPDKDRERPVYNLKESMLARCYIDILSLEKH
SEAAQRLIKWKQPAEGSSGPTGDFAKVCYNEIKARSTVEEGQLSVEAVNMLLDKLAVGKM
KQAEYVPILKAINMQCTAEEQEWIIRIILKDLHISIRERGVLSAFHPDAIDLYNICSDLK
RVCWTLYDPGFRLNKNETHLELFHSFVPQLCGRMNDATLENIAKAIGAPKEFIMEEKLDG
ERIQLHMRGNGAQWFYCSRKAKDYTYLYGAHPGEGSLTRYIANAFQDNIRNIILDGEMMV
WDPVVERYLAFGTLKSAALDHFNDETAPRPCFKVFDILFLNDHCLSRKRLSERKRLLRSG
KIFKNIEDYKGRLEFVDEKRGKSAKDIREYLERVVETKGEGLVVKKTDVIYQTNSRGYDW
IKVKPEYSDQMGENLEVLVLGGWWGKGGRSGKISRLLCGLREQAFDDGTVEQPSFKTFCS
IGSGMSYSDYEWILNKHKKHWKPFDRSNPPAFMKLGPVGLDDKPDVYIEPENSFVIEVKA
SEIVPAGGGYGIGFTLRFPRCKYIYYDRNSRDYELDDESKERDMWTCMSVDDFMDLFSRP
KRSYDDSQGPGKKKKRKVVRSKKNHIITNFRGQKLSDIDVETSIFSDMTFYIAKGTSEYP
KADLEALVHKHGADFTQAQLSDLSAIVISPDQKSPLVRAQIRHGVNVIKPEWIFESIARR
KALPLLKEFLVYASEEAQEGRYYNKTLEQYDKVSFVRDRTGETLFEEDGDADVEEEVMDD
EDKDEIDMEEAREAKDRRMAKEDLKERESNRSLEQKKLQEAWGLRSRASTGGSDSEAEEI
KSLKEESDTDSERIRRLRAIYQDEEDEENDSHESDVGVDGDDYRLVPLNGLNDKEEGFMG
ESPEAMHYDEDRIFYHLAFYIDTPENAAVNGLESSSPSLNAQERLAKIEKLLAENGGRAV
KSISDPKLTHIIMDDEDSGRYVELTRKTALPRRKHIVTPKWVEDCVDEETLLDEDLYKPK
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggcagtacatgctccatattatcatgcacctccgcccacgcaggaaataaatggtgag
aagccgacattagccgcagcgacaaccctcgaacgtccaacggactgtatcaaccgcggc
cagtatcccgctttctacattatctgcggctatctgaacagattacgagcagatgctcca
cataaaaagtatgagcttctgatgaggatatttgggaactggagggagaaagtagggcct
gatctttatccgttgatcaggttgttgttacctgataaagatagggaaaggcccgtgtat
aatttgaaagagtcaatgttagctcgatgctacattgatatattgtcgttggagaagcat
agcgaggcggctcagaggctgatcaaatggaagcaacctgcagaaggttcctcaggtcca
accggagattttgcgaaagtctgttacaatgagataaaagctcgatccaccgtggaggaa
ggtcagctgagtgttgaggcggtaaatatgcttctcgataagcttgccgttgggaaaatg
aagcaagcagaatacgtgccgatactcaaggctatcaatatgcagtgcacagctgaggaa
caagaatggattatccggatcatcctcaaagacttgcacatttcaatacgtgaacgagga
gttttatcagcgttccatcctgatgcgatagatctgtataacatctgttcagaccttaag
cgtgtctgttggactttatatgatcctggcttcaggctcaataaaaatgagacacatctt
gaattattccactcctttgtcccccaattatgtggccgcatgaatgatgcgacacttgaa
aatattgcaaaggcgattggagctccaaaagaattcatcatggaagaaaagttggacggg
gagaggatacagttacacatgagaggcaatggtgcacaatggttctattgttcaaggaaa
gccaaagattatacatatctgtatggtgcccatccaggagagggaagtttgactcgctat
atagctaatgccttccaggacaatataagaaatatcattcttgacggggaaatgatggtt
tgggatcctgtagtggaacgttacctggctttcggaaccctcaagtcggctgcacttgac
catttcaatgatgaaaccgccccgcgtccatgttttaaggtatttgacatacttttcttg
aacgaccattgcctttcccgcaaacgtttatcagaacgcaagcgccttcttcgctctgga
aaaattttcaagaatattgaggattacaaggggagattggaattcgtagacgaaaaaaga
gggaagagcgcaaaggacattagggagtatttggagagagtggtcgaaaccaagggcgaa
ggtctagtggttaagaagacggatgtaatctatcaaacaaactcgagaggatatgactgg
atcaaggtcaagcccgagtatagtgaccaaatgggcgagaatcttgaagtcttggtgttg
ggcggatggtggggtaaaggaggtcgttcagggaagatttcaagattactctgcggatta
agagagcaggcgtttgacgatggcacggttgagcaaccgagcttcaagactttctgttcg
atcggttctgggatgagctattcagactacgagtggattttgaataaacacaagaagcac
tggaagccctttgataggtccaatccacccgcatttatgaaactggggccagtgggttta
gacgacaagccggacgtttatatcgaaccggagaactctttcgttatcgaagttaaagcg
tctgaaattgtgccggcaggcggaggttacggaataggatttacgcttcgttttccacgc
tgcaaatacatctactacgacaggaatagtcgagactatgagctggacgatgagtcaaag
gagagggatatgtggacttgtatgtctgtggatgacttcatggacctcttctcaaggccc
aaaagatcatatgatgatagtcaaggtcctgggaaaaagaagaagcgcaaggtggtcagg
tctaaaaaaaaccacatcatcaccaattttcgaggtcagaagctttcagatatagatgtg
gagacgagcatattcagcgatatgacgttttatattgcaaaaggcacatccgagtacccg
aaagctgatctcgaagcacttgtgcataagcacggtgcagatttcacgcaagctcagcta
tccgacttatcagcaatcgtcatctctcccgatcaaaagagccctctagtacgagcccag
atccggcacggagtcaacgtcatcaagccagaatggatatttgagagtattgcacggagg
aaagctttgcctttgttgaaggagttcctggtctacgcgtcggaagaagctcaagagggg
cgatactataataagacactagagcaatatgacaaggtttcttttgtacgtgatcgtacc
ggcgagacactcttcgaagaagatggtgatgccgatgtcgaagaagaggttatggatgat
gaggacaaagatgagattgacatggaagaagctcgagaagccaaggacagaaggatggcc
aaagaggatctcaaagagagagaatcgaatagatcactggaacagaagaagcttcaggaa
gcatggggcctgagatcaagagcgagtacgggaggttccgatagtgaagctgaggaaatt
aaatcgttgaaggaggagagtgacacagattcggaaagaattagaagactccgggccatt
taccaggacgaagaggacgaagaaaacgacagtcatgaatcagatgttggtgtagatgga
gatgattacagactggttcccctcaacgggttaaatgacaaggaggagggatttatggga
gagagtccagaggcaatgcattatgatgaagatcgaattttctatcacctcgcattttac
atcgatactcccgagaacgctgcggtcaacggcttggaaagctcctctccctctctcaac
gcccaagaaagactcgccaagatagaaaagttgctggcagagaacggtggacgtgcggtg
aaaagcatctccgatcccaagctcacgcacattataatggatgatgaggattcaggaaga
tacgtcgagttgacgaggaagactgccctgccaagaaggaaacacatcgtgactcccaaa
tgggtggaggattgcgtagacgaagagacattgctggacgaagatttatataaaccgaag
taa
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