Clostridioides difficile 630: CD630_05060
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Entry
CD630_05060 CDS
T00487
Name
(GenBank) Reverse transcriptase/maturase/endonuclease,Group II intron
Organism
cdf
Clostridioides difficile 630
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Gene cluster
GFIT
Motif
Pfam:
RVT_1
HNH
HNH_4
Col-Pyo_DNase
HNH_5
Intron_maturas2
CTC1_2
Motif
Other DBs
NCBI-ProteinID:
CAJ67336
UniProt:
Q188V0
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Position
596830..598659
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AA seq
609 aa
AA seq
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MTVKVSNKKALRFNEYYDTQKIQDELYQLSAEGSHVFRDLMSYITQEENILLAYRNIKSN
KGSKTAGTNKRTIIDVGEENPYQLVQYVQNRFNNFQPHSIRRVEIPKPNGKTRPLGIPTI
EDRLVQQCIKQILEPILEAKFHKHSYGFRPERSSHHAIAIFQQWTFKGFHYVVDIDIKGF
FDNVNHGKLLKQLWTMKIRDKTFISILSRMLKAEVKGIGKSTKGTPQGGILSPLLANVVL
NELDWWIDSQWDGFPTKRKYSSLLSKTQSIRKYSNLKEIKIVRYADDFKIMCKDYHTAQK
IFLATKQWLKVRLDLDISPEKSKVTNLRKNYSDFLGFKLKVKKGKANGYTNRSRMCDKAK
INAVDKLKNNIKTIAANPTVDNVNKYNSVVLGLHNYYKIATLVNLDFVDIAFTVNKSLDC
RTKNIRNKHGTLTSTYQKFYKQYNWKKRFIANMILFPIAGIKFTMPRIFPKDWNRYTPEG
RLFIHQRLKMDMHTVYYLLENSNPNKSVEFNDNRISLFIAQQGKCHVSGENLSKDNMEVH
HIKPLSLGGNDNYKNLVIVTKETHKLIHATKRETIVHYLPLVLKKERSLEKLNKLRALAG
NSEIEMNYC
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcaaagttagtaacaaaaaggcactgaggttcaatgagtattacgatactcag
aaaattcaagacgaactctatcaattatctgccgaaggcagtcatgtgtttagagattta
atgagctatatcacacaagaagaaaatattttattggcttatcgaaatatcaaaagcaat
aaaggcagtaaaactgctggaacaaataaaagaacgattattgatgttggtgaagaaaac
ccatatcaattagttcaatacgttcaaaatcgatttaacaactttcaacctcactccatc
agaagagtcgagattccaaagccaaatggtaaaaccagaccgctaggaatcccaacaatt
gaggatagattagtacagcaatgcataaagcagatccttgaaccaattttggaagcaaaa
ttccataagcattcttatggatttcgaccagaaagaagttcgcaccatgccatagcgata
tttcagcaatggacatttaaaggatttcactatgtagtggacattgatattaagggcttc
tttgacaatgtaaatcatggaaaattgcttaagcaactctggacaatgaaaattcgagac
aagacatttatttcaatattgtcgagaatgcttaaggcagaggtaaaaggcattggaaaa
tcaaccaaaggaaccccacaaggtggtattctttctcctcttttagctaatgtggtgcta
aacgaattagattggtggatagatagtcagtgggacggatttccaaccaaaagaaaatac
agtagtctgctgagtaaaactcaatcaataagaaagtattcaaacttgaaagaaatcaaa
attgtccgttacgcagatgatttcaaaatcatgtgcaaagattatcatactgcccagaaa
attttcctcgcaacaaaacaatggttaaaagtacgacttgatttagacataagtcctgaa
aagtcaaaagtaactaatctgagaaaaaattattctgactttctaggattcaagttgaaa
gtgaaaaaaggaaaagcaaacggatataccaatcgaagccgaatgtgtgataaggcaaag
attaatgcggtagataaactaaagaacaatatcaaaacaatcgccgctaatccaactgta
gataatgtcaataagtacaactctgttgttctaggtttgcataactattataaaattgcg
actctggtcaacttagattttgtagatattgctttcacagtaaataaaagtcttgattgt
cgaaccaaaaatattcgcaataagcacggaacgctaaccagtacctatcaaaaattctat
aaacaatataactggaagaaacgattcatagcgaacatgattttatttccaatagccggg
ataaaatttacaatgccaagaatctttccgaaggactggaatcgatatacgcctgaaggt
aggctgtttattcatcaaagattaaagatggatatgcataccgtttattacctgctggaa
aattccaatccgaataagtctgtagaatttaacgataatcgaatctctctgttcatagcc
caacaaggaaaatgtcatgttagtggtgaaaatttatcaaaagataatatggaagttcat
cacattaagccgttatcacttggtgggaatgataactataagaatcttgtgattgttaca
aaagaaacacacaaattgattcatgcgactaaaagagaaacgatagttcattatttacct
ttggtattaaaaaaggaaagatcattggaaaagctgaataaattacgtgctttagctggg
aatagtgaaatagaaatgaattactgttga
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