Candida dubliniensis: CD36_54970
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Entry
CD36_54970 CDS
T01140
Name
(RefSeq) RNA-dependent ATPase/ATP-dependent RNA helicase, putative
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cdu
Candida dubliniensis
Pathway
cdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CD36_54970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cdu03041
]
CD36_54970
Enzymes [BR:
cdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CD36_54970
Spliceosome [BR:
cdu03041
]
Complex C
Other components
Step II factors
CD36_54970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
ResIII
ATPase
PhoH
Flavi_DEAD
SLFN-g3_helicase
AAA_30
nSTAND1
AAA_11
AAA_33
T2SSE
NB-ARC
AAA_16
Sec7
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
8048012
NCBI-ProteinID:
XP_002420791
UniProt:
B9WI79
LinkDB
All DBs
Position
5:complement(1209256..1212264)
Genome browser
AA seq
1002 aa
AA seq
DB search
MTQSDSQLLSIVQKHLELPENDENVVLIAKFLINLYEKSTSPTLDEFKKVVKDNGGDEFE
DEFIKDVYNQISRTSKPPQPIRVGEIYSGTVEGLTNYGAFIKIENTSGLCHISQMSFDGS
RIESTNILQPKQKVFAKVIDIQANHTKISLSMRGINQTTGQEESILRGRHHERQPRPKRK
LTSPERWEIRQLISSGAVSADAYPELDEEEDIENPHKEKTNDLHIELNDKKPDFLKSVKV
TKDFPETNPIPVNRSGPLSKSAQRGSKFARDFKEEKLKQKKQRQKEEKIQSEMSDPLFQT
SEPVSNVDIDTESFISKWKKSNKTETFGKRTSLPIQEQRCMLPVYAMRTQLVEAIRENQF
VVIVGETGSGKTTQIVQYIYEEGMNKINGDTKLIGCTQPRRVAAESVAKRVSEEVGCQLG
DTVGYTIRFEDVTSENTVIKYMTDGMLEREALNDPNMNRYSVIMLDEAHERTIATDVLFA
LLKNAAKQNPNLKVIVTSATLDSNKFSRYFNNCPIITIPGRTFPVEVLYTKAPEMDYLAA
ALESVIQIHVAEPAGDILVFLTGQEEIETSCEALHERMKLLGDNVPELIILPVYSALPSE
MQTRIFEPTPPGSRKVILATNIAETSITIDGIYYVVDPGFVKINMYDSKLGMDSLRVTPI
SKAQANQRSGRAGRTGPGKCYRLYTEQAYEKEMIPNTIPEIQRQNLSHTILMLKAMGIHD
LVNFEFMDPPSTTTMLTALEDLYILDALDDNGNLTTLGRKMADLPMEPALAKTLIQSVEY
ECTEEILSIVAMLSVQTIFYRPKDKQALADQRKTRFHHSLGDHLTLLNVFQSWCRNNYSK
TWCRDNFIQERSMRRAMEVRKQLKLIMHRFGYKTMSCGNDVDRVRRTFCSGYFKNSAKRQ
EGEGYKTLNENTLVFLHPSSSLYGKKPQYVIYHTLLLTSKEYMHCVTIIDPNWLYELAPK
YFRPADAKTVQEIKKKQKIVPLFSRQKKDSWRLSSHRPAKRR
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgacacaatccgattcccaactcctctcaatagtccagaaacatttggagctccccgaa
aacgatgaaaatgttgtactcattgcaaagttcttaataaacttatatgaaaaatctacc
agcccaacacttgatgaattcaaaaaagttgtcaaagataatgggggtgacgaatttgaa
gatgagttcataaaggatgtttacaatcaaatatcacgtaccagcaaaccacctcaaccc
ataagggtaggtgaaatatattctggaactgtagaaggcttaacgaactatggtgctttt
atcaagatagagaatacatctggcctatgccacatttcacaaatgtcctttgacggatca
cgaatcgagtccaccaacatcctacaaccaaagcagaaggtatttgcgaaagtaatcgat
attcaagccaatcacactaaaatatccttatcaatgcgaggaataaaccagaccaccgga
caagaagagtcaatactccgaggaagacaccatgagcgacagccaagaccaaaaagaaag
ttgacttctcccgagcgctgggaaatacgccaacttatcagttctggtgcagtgtctgct
gacgcctacccagaattggacgaggaagaagatatagaaaacccacataaagaaaaaacc
aatgatttgcatatcgagttgaacgataagaaaccagatttcttgaaaagtgttaaagtc
acaaaagactttcctgaaaccaatcccattcctgttaaccggctgggtccattaagcaaa
tcagcgcaaagaggatccaagtttgccagagacttcaaggaagaaaagttgaaacaaaaa
aagcaaagacaaaaagaagaaaaaatacaatcagaaatgtcagacccgttatttcaaacc
tcagaaccagtaagtaacgtcgacattgataccgagtcgttcatttcaaaatggaaaaaa
tccaacaagacagagacatttgggaagcggaccagtcttcccatacaggaacaacgatgc
atgttgcctgtgtacgccatgcgaacacaattagttgaagccatacgggagaaccagttt
gtagtgattgttggagaaacaggctcagggaaaaccacccaaattgttcaatacatatat
gaagaaggaatgaataaaatcaacggtgatacaaaactaatagggtgcacccaacctaga
agagttgctgctgaatcggtagcaaaaagagtgtctgaagaagttgggtgccagcttgga
gatactgttggttatactattagatttgaagacgtaactagtgaaaacacggtaatcaag
tacatgacagatgggatgttggaacgtgaggcgttgaacgacccgaatatgaaccggtac
tcagtaatcatgttggatgaagcccacgaaagaacaattgccactgacgttttgtttgcc
ttgctcaaaaatgccgctaaacaaaaccctaacctaaaagtgattgttacttcggcaacc
ttagattcaaacaagttttctcggtactttaacaattgcccaattataaccattccggga
aggacattccccgtagaggtactatacacaaaagcaccagaaatggattatcttgctgcc
gcattagagtcggttatccaaatccacgttgcagaacctgctggcgacattttagtgttt
cttactggtcaagaggagattgaaactagctgtgaggcattacacgaacgaatgaaatta
ttaggcgacaatgtacccgagctaataatcctccctgtatactcagcacttccttcagaa
atgcaaacccgtatttttgagccaactccgcctggttcaagaaaagtgattttggctacc
aatattgccgagacatcgatcaccattgacggaatatactatgttgttgaccctgggttt
gttaaaataaatatgtacgattccaagttgggtatggattctttgagggtgacaccaata
agcaaggcacaagcaaaccaacgtagtggtagagcagggagaaccggccctggaaaatgc
tacagattatacaccgaacaggcttacgaaaaggaaatgataccaaataccatccctgaa
atacaaagacaaaatctatctcacacaattctaatgttaaaagcaatggggattcacgat
cttgtaaatttcgaatttatggacccaccatccaccaccaccatgcttactgcactagag
gatttgtatattcttgatgcactagacgataatgggaatttgacaactttaggaaggaaa
atggcagatttaccaatggaacctgcacttgcaaagacattaatccaatctgttgaatac
gaatgtacagaagaaattctaagcattgttgccatgttgtcggtacaaacgatattttac
cgcccaaaagataaacaagcattggctgaccagcgaaaaactcgattccaccactcctta
ggtgaccacttaactttgctaaacgttttccaactgtggtgtcgcaacaattatagtaaa
acatggtgtcgagataatttcatacaagaaagaagcatgcgtcgggctatggaggtacga
aaacagctaaagttgattatgcatcgttttggatacaagaccatgtcgtgtggcaatgat
gtagaccgggttaggaggactttctgttctgggtactttaagaattcagccaaaaggcag
gaaggcgaagggtacaaaacactaaacgaaaacacattggtattcttacacccgtcgtct
tctctatacggcaagaaaccgcagtatgttatttaccacacgttattgcttacatcaaaa
gagtatatgcactgtgtgacaatcatagatcctaattggctatatgaacttgcaccaaag
tactttagacccgcggatgccaaaaccgtgcaagagatcaaaaagaaacaaaaaattgtg
ccgctattttctcgacaaaagaaagatagttggcgactcagttctcaccgcccagctaaa
aggagatag
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