Caenorhabditis elegans (nematode): CELE_C07H6.1
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Entry
CELE_C07H6.1 CDS
T00019
Symbol
lig-4
Name
(RefSeq) DNA ligase IV
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CELE_C07H6.1 (lig-4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_C07H6.1 (lig-4)
Enzymes [BR:
cel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CELE_C07H6.1 (lig-4)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CELE_C07H6.1 (lig-4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
BRCT
mRNA_cap_enzyme
DUF6306
Motif
Other DBs
NCBI-GeneID:
176067
NCBI-ProteinID:
NP_001367462
WormBase:
WBGene00002986
Ensembl:
WBGene00002986
LinkDB
All DBs
Position
III:7521463..7524870
Genome browser
AA seq
741 aa
AA seq
DB search
MASDVIFDEVVDVFNKIRRTSNVKSKQATFQKNFESWKEKCSDPSDMFVIIRFFVSDYER
FRKFDMGPTKLASFMAKTFHDVRADYVSTISKDASTAARQLAEKISEEYRTENDESTVVT
VSELNEILDFLAAGPMDDGNKRDKMSKLVKRCSEDELEWIFNVILKNVESALGAPSNRIL
DWISPSACAIWDQTHDLKAVLKGKLVENKGTNELGETNDDDDEHLFKIWTPMLLQKQKRG
DWYANIEKFGGQKFFLQTKFDGENVLLHKKGNEYRWFTRNNNDFSKEYGDSSMAIGKLSS
RIHSFFNKECESAIFNCELMLWDKKTKKLCRHNDASTTSDAQVLSFRHVKPDDNQQLTVV
LFDLLYLNGKPFFGAPLHQRLEMLKIAPLKKEREDTIFVAKHEEGSKKEDIQQFFEIAMA
NNEEGIVVKRTDSVYVKGQRSASNGWFKLKPSASKDCDLDLALVAVHPGAGRNGKTLYRF
AAFDEKTQDYKLCLSCSYGLSDTVREAIRFEYGQLLEEAPEELTFYGKRPKNIARGDGGY
IDFERWQVIKITSNGVRNGKLVDPVMREWRLDKPVEQVNTWEEFSDYATALQECKLGDNV
DSDEEDSEDKKPDTLKVERITRKAIHQSAPVRLKRAKLESSLTGIEVAVLQGTSETIRRK
CEEILKHFDATVVKGITPSTKLCIATAPKSTHPKTAQAIASNSCTVLKPAWLERCNKDDL
IQAWLPSDVFHAIEGGFEIQE
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagatgtgatcttcgacgaagtagttgacgtcttcaacaagattcggcggact
tcaaatgtgaaatcaaagcaagcaacctttcagaaaaactttgaatcatggaaagaaaag
tgttctgatccatctgatatgtttgtcataatacggttcttcgtttcggattacgagagg
ttcagaaagttcgacatgggaccgactaagttggcaagctttatggcaaaaacttttcac
gacgtcagggctgattacgtatcaactatctcgaaagatgcatcaacagcagctcgtcag
ttggctgaaaagatttctgaagaatatagaactgaaaatgatgaatctacagtagtcacg
gtttccgagttgaacgaaattcttgatttcttagcggcgggaccaatggatgatgggaac
aaacgagataagatgtcgaaactcgttaagagatgctctgaagacgagttggaatggatt
ttcaacgtaattcttaagaacgttgaatcagctcttggagccccaagtaacaggattctc
gactggatatcgccttctgcttgtgctatttgggatcagacacatgatttgaaagcagtt
ctaaaaggaaaattggtagaaaacaaaggaaccaacgaattaggagaaacaaatgatgat
gacgatgagcatctttttaaaatatggacacccatgttacttcagaagcagaaaagaggt
gactggtatgcaaatattgaaaagtttggaggtcagaaattctttctgcaaacaaaattc
gatggagagaatgtgctgcttcataagaaaggaaacgaatatcgatggtttacaagaaat
aacaatgatttttcgaaggaatacggtgattcgtcaatggcaatcggaaagctctccagt
cgtatacattcatttttcaataaagaatgtgaatcggcaattttcaactgcgaactcatg
ttatgggataagaaaacgaaaaaactttgccgtcacaacgatgcttcaaccacatcagat
gctcaagttttatcattccgacatgtcaaacctgacgataatcaacaattaaccgtcgtc
ttgtttgatttactgtacttaaatggaaaaccgttttttggagcaccacttcatcagaga
ctcgagatgctcaagattgctccactgaaaaaagaacgagaagatacaatttttgtggcg
aaacatgaggaggggagtaaaaaagaggacattcaacaattctttgaaatagcaatggca
aataatgaagaaggaatcgttgtgaagagaacagatagtgtttacgtgaaaggacaaaga
agcgcttctaatggatggttcaagctgaaaccgtctgcatcaaaggactgtgatctagat
ctggcactagttgctgtacatccaggagctggaaggaatggaaaaacgctctacagattt
gcggcttttgatgagaaaactcaagattacaagctatgcctctcatgctcttatggactt
tctgacactgttcgcgaggcgattcgttttgagtatgggcaactcctagaagaagctcct
gaagagctcacattttatggaaaacgaccgaaaaatattgccagaggagatggtggatac
attgatttcgagcgctggcaagtgattaaaatcacatcgaacggtgttcgcaacggaaaa
ttggttgatcctgttatgagagagtggagacttgataagcctgttgaacaggtcaacact
tgggaagaattttcagactatgcaacggcacttcaagaatgtaaattgggtgataacgtg
gacagtgatgaagaagattctgaagataagaaaccagatactttgaaagtggaacgaatt
acccgcaaagctattcatcaatcagctcctgttcgtctgaaacgtgccaaattagagtca
agtttgactggaattgaagtcgccgttcttcagggaacatctgaaacaattcgacgaaag
tgtgaagagatcttgaaacattttgatgcaactgtagtgaaaggaataactccatccacc
aaattatgtattgctactgctccaaaatccacacaccctaaaacagctcaagccatcgct
tcgaactcttgtactgttctgaaacccgcctggctcgaacgttgcaataaagatgatctg
attcaggcttggttgccttctgatgtgtttcatgccatcgaaggtggattcgagattcag
gaataa
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