Caenorhabditis elegans (nematode): CELE_C29A12.3 Help Entry CELE_C29A12.3     CDS       T00019                                  Symbol lig-1 Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism cel  Caenorhabditis elegans (nematode) Pathway cel03030   DNA replication cel03410   Base excision repair cel03420   Nucleotide excision repair cel03430   Mismatch repair Brite KEGG Orthology (KO) [BR:cel00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     CELE_C29A12.3 (lig-1)    03410 Base excision repair     CELE_C29A12.3 (lig-1)    03420 Nucleotide excision repair     CELE_C29A12.3 (lig-1)    03430 Mismatch repair     CELE_C29A12.3 (lig-1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:cel03032]     CELE_C29A12.3 (lig-1)    03400 DNA repair and recombination proteins [BR:cel03400]     CELE_C29A12.3 (lig-1) Enzymes [BR:cel01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      CELE_C29A12.3 (lig-1)     6.5.1.6  DNA ligase (ATP or NAD+)      CELE_C29A12.3 (lig-1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      CELE_C29A12.3 (lig-1) DNA replication proteins [BR:cel03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     CELE_C29A12.3 (lig-1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      CELE_C29A12.3 (lig-1) DNA repair and recombination proteins [BR:cel03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      CELE_C29A12.3 (lig-1)    NER (nucleotide excision repair)     Other NER factors      CELE_C29A12.3 (lig-1)    MMR (mismatch excision repair)     Other MMR factors      CELE_C29A12.3 (lig-1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  179502 NCBI-ProteinID:  NP_741625 WormBase:  WBGene00002985 UniProt:  Q27474 LinkDB All DBs Position V:<10814106..10816718 Genome browser AA seq 773 aa AA seqDB search MFFSKAGKAAVEWAKGSKVPYKEFALTLEKIEELSGKKKVDELAQFFTKVLDFSPDDLTA CVYMSVNQLGPSYEGLELGVAENSLIKAVAKATGRTEGKIKEDLRAKGDLGTVAQQSRSN QKMLAVPKALTVPTVFNKLTEIAKLSGTSAMNKKVDAISALLIACQGIEARFLVRMLAGK MRIGLGEQSVLSALGHAFTLSKITDQKVRGDKLDSLKDANVKRVKTAYCECPNYNRLIEV ALTEGVEALVEKCKLSPGIPLKPMLAHPTKGIDEIMRRFRNQTMTCEWKYDGERGQIHKR EDGQIFIYSRNQENNTTKYPDIIEKISSCIGDGVTSFIVDAEVVAIDEAGLILPFQVLST RKRKNATDDNGVKVVVFLFDLLYFNGEPLVRKPLRKRRELLRTNFKKIDGSFYFATSVDT NDTDEINSFFDEAVQNKCEGLMIKTLDTEATYEISRRSHSWLKMKKDYVDGVGDTLDLVV MGAYSGVGKRTGVYGGYLLGCYNPTTEEYESVCKIGTGFTDEDLAEQYKILQDKKIDKSP SYYQFDHTLKPDDTFSPYLVFEVKCADITISPRHKAASGLTDDGKGISLRFPRFLRIRDD KNSDDATSSEQVLEMYKNQEAFANQKIEKADAVDEDDEFEEKEDEEEELNMTNVSEGSSK ENPVKEEIKKETPKSVSPKKFEKKPPVKSSPVNKSPVKSSPIKKEAEKKKGPVASIFSSS TKKNEKDVKVESPSPIRKKKLPSDSDESDEETSTNKKQPAKKRSRVAIDSDSD NT seq 2322 nt NT seq  +upstreamnt  +downstreamnt atgtttttctcaaaagctggcaaagccgctgttgaatgggcaaagggttcaaaagtccct tacaaggagtttgctctcacccttgagaaaatcgaagagttatcgggaaaaaagaaagtg gatgaattggctcaatttttcaccaaagttctggacttttcacccgacgatttaacagcg tgcgtgtacatgtcagttaatcagctcgggccatcgtatgaagggctcgagcttggagtt gctgaaaattcgctgatcaaggctgttgctaaagcgaccggacgtacagagggaaaaatt aaagaagatcttcgcgcgaaaggagatcttgggactgtcgcacaacagtcaagatccaat cagaaaatgcttgctgttccaaaagcattaactgttccaactgttttcaacaagttaacc gaaattgcaaagctcagtggcacttcagctatgaacaagaaagttgatgccattagtgca ctcctcattgcatgtcaaggaattgaggctcgattcctcgtccgaatgctcgccggcaaa atgagaatcggtctcggtgaacaaagtgttctatcagcacttggacatgcattcactctt tcgaaaataactgatcaaaaggttcgtggtgacaaactcgattctctgaaagatgcaaat gttaagcgagtaaagaccgcctattgcgaatgccctaactacaatcgtctgatcgaagtt gcactgactgaaggtgtggaagctcttgtcgaaaaatgtaaactttcacccggaattcca ctgaaacctatgctggctcaccctacaaagggaattgatgaaattatgcgacgattcaga aatcagacaatgacctgtgaatggaaatatgacggagaacgcggccagattcataaacga gaagacgggcaaattttcatctacagtcgaaaccaagagaacaacactaccaagtacccc gatattatcgaaaaaatttcatcctgcatcggggatggggtaacttcatttattgtcgat gctgaagttgtagctatcgatgaggctggcttaattcttccgttccaagttttgtcgact cgtaaaaggaaaaatgcaactgatgataacggagtcaaggttgtagtttttcttttcgat cttctctacttcaatggggagcctctcgtgagaaaaccactccgaaaaagaagagaactt cttcgaacaaacttcaaaaagattgatggaagcttctattttgcaacttccgtagataca aatgatactgatgaaatcaactctttcttcgatgaagccgttcaaaataaatgcgaagga ctcatgatcaaaactctcgacactgaagctacttatgagatttcaagacgttcccacagc tggttgaaaatgaagaaagattacgttgatggagtaggagatacgttggatcttgtcgtc atgggtgcttattctggagttggaaagagaactggagtgtatggaggatatcttctcgga tgttacaatcctactacagaagagtacgaaagtgtatgcaagattggaactggtttcact gatgaagatttggccgagcaatacaagatcctacaagacaagaaaattgacaaatctcct tcttattatcaatttgatcacactcttaaaccagatgacactttttctccgtatcttgtt ttcgaagtcaaatgtgccgatattactatatctccgcgtcacaaagctgcaagtggattg acggatgatggaaaaggaatctctttgagatttcctcgtttcctgcgtattcgggacgat aaaaattccgacgatgcaacatcttcggagcaagttcttgaaatgtacaaaaaccaagaa gcttttgccaaccagaagatcgaaaaggcggatgcagttgatgaggatgacgaatttgaa gaaaaagaagatgaagaggaggagttgaacatgaccaatgtatctgaaggaagttctaaa gaaaatccagtgaaagaggagatcaagaaagagactcctaaatcagtatccccgaaaaaa ttcgaaaagaaaccgcctgtaaaatcttcaccagttaacaaatcgcccgtgaaaagttca ccaataaagaaagaagcagagaaaaagaaaggaccagttgctagcatcttttcatcatcg acaaagaagaatgaaaaagacgttaaagtggaatctccatctccgatcagaaagaagaag ctgccttctgattctgacgagtctgatgaagaaacctcaactaataagaaacagccagca aagaagaggtctcgcgttgcaattgattccgattccgactaa

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