Cellulomonas sp. H30R-01: GXP71_00855
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Entry
GXP71_00855 CDS
T06411
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
celh
Cellulomonas sp. H30R-01
Pathway
celh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
celh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GXP71_00855 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
celh03400
]
GXP71_00855 (mfd)
Enzymes [BR:
celh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GXP71_00855 (mfd)
DNA repair and recombination proteins [BR:
celh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GXP71_00855 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHT54788
UniProt:
A0A6C0FEH7
LinkDB
All DBs
Position
196756..200433
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AA seq
1225 aa
AA seq
DB search
MDLTGLLPALLDDPALAEAVSLVPARGELDVVGPAGVRPPLLAALAGAHATAGASGPGTK
GRPLVVVTATGRDADELAAALRCYLPDDAVAVLPAWETLPHERLSPRSDTVARRLAVFRR
LAHPTADGPTGPVRVLVLPVRALLQPVVDGLGELEPVAVSVGDRVDLDDLTERLVGAAYQ
RVDMVEKRGEFAVRGGILDVFPPTDDHPLRIELWGEDVEEIRWFSVADQRSLEVAQHGLW
APPCREILLTDAVRERAASLAERLPGAVDMLDKLAQGIAVEGMESLAPALVERMVPVLDL
VPDDALLVVADPERVRRRAHDLVATTEEFLAAAWTSAAAGAATPLDLSAASFASFAEVRA
LSAVRGLGWWTLSPFTLDADATVAAGAPGADAGDALAAGRALPDDLAADGHTVVVAARDV
ERYRGEVARAVADVRTLQQQGWHLVLATEGHGPAQRMVEQLKASDVPARLVTSVDDRPEG
GVVLVVPAPAGPGFVAEPLRLAVFSEADLTGRAGSSTRDMRRMPSRRRNVVDPLQLRPGD
FVVHEQHGVGRFVELVQRTIGTGANAATREYLVIEYASSKRGQPGDRLFVPSDQLDQVTK
YVGGEAPTLNKMGGGDWAKTKGRARKAVKEIAAELIRLYSARMATPGHAFGADTPWQREL
EDAFAYVETPDQLATIDEVKADMEKAVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVA
VLVPTTLLVQQHLDTFSERYSAFPVTVKALSRFQSDKESREVVAGLADGSVDIVIGTHRL
ITGEVRFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLAMSATPIPRTLEMAVTGIREM
STLATPPEERHPVLTFVGAYDEKQITAAVRRELLREGQVFYVHNKVDSIERAASRIAELV
PEARVAVAHGKMNEHQLERVIVDFWEKRFDVLVCTTIVETGLDISNANTLILERSDLLGL
SQLHQLRGRVGRGRERAYAYFLYPPEKPLTETAHDRLQTIAANTDLGAGMAVAMKDLEIR
GAGNLLGGEQSGHIEGVGFDLYIRMVGEAVASFRGDQPEELPDVTIELPVDAHIPHDYIA
HERLRLEAYKKIAAAADATALGEVRAELADRYGAVPAAVDNLFEVAEFRQKVRAAGLTDV
TAQGKFVRFAPIELPESAQLRLKRLYPGSILKPATRTVLVPFPTTARIGGRPLHGRELLA
WARQLVDAVVLGDVAAAASVGTGGR
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggacctcaccggcctgctgcccgcgctcctcgacgaccccgcgctcgcggaggccgtc
tcgctcgtccccgcgcggggcgagctcgacgtcgtcggtcctgcgggcgtgcgaccgccg
ctgctcgccgcgctcgcgggcgcgcacgcgacggccggggcgtcgggaccgggcacgaag
gggcggccgctcgtcgtggtgaccgcgacgggccgggacgcggacgagctcgcggccgcg
ctgcgctgctacctgcccgacgacgcggtcgccgtgctgccggcgtgggagacgctgccg
cacgagcggctgtcgccgcggtccgacacggtcgcacgccggctggcggtgttccgccgg
ctcgcgcacccgaccgcggacggtccgaccggcccggtgcgtgtcctcgtgctgccggtg
cgcgcgctcctgcagccggtcgtcgacgggctcggcgagctcgagcccgtcgcggtgtcc
gtcggcgaccgcgtcgacctggacgacctcaccgagcggctcgtcggcgcggcgtaccag
cgcgtcgacatggtcgagaagcgcggcgagttcgcggtgcgcggcggcatcctcgacgtg
ttcccgccgaccgacgaccacccgctgcgcatcgagctgtggggcgaggacgtcgaggag
atccgctggttctccgtcgcggaccagcgctcgctcgaggtcgcgcagcacgggctgtgg
gcgccgccgtgccgggagatcctgctgacggacgcggtccgtgaacgcgcggcgtcgctc
gcggagcggctgcccggcgccgtcgacatgctcgacaagctcgcgcagggcatcgcggtc
gagggtatggagtcgctcgcgcccgcgctcgtcgagcgcatggtgcccgtgctcgacctc
gtgccggacgacgcgctgctcgtcgtcgccgacccggagcgcgtgcggcgtcgtgcgcac
gacctggtcgcgacgaccgaggagttcctggccgccgcgtggacgtcggccgcggcgggc
gcggcgacgccgctcgacctgtcggccgcgtcgttcgcgtcgttcgccgaggtgcgcgcg
ctctcggccgtgcgcgggctcgggtggtggacgctcagcccgttcacgctggacgccgac
gcgacggtggcggcgggtgcgcccggcgcggacgcgggcgatgcactcgccgcaggccgg
gcgctgccggacgacctggccgccgacgggcacaccgtcgtcgtcgcggcgcgcgacgtc
gagcggtaccgcggggaggtggcccgcgccgtcgcggacgtgcgcacgctgcagcagcag
ggctggcacctggtgctcgcgaccgaggggcacgggcccgcgcagcgcatggtcgagcag
ctcaaggcgtcggacgtcccggcacggctcgtgacgtcggtcgacgaccggcccgagggc
ggggtcgtcctcgtcgtgcccgcacctgccgggccgggcttcgtcgccgagccgctgcgg
ctcgccgtgttctcggaggccgacctcacgggccgggcgggcagcagcacgcgggacatg
cggcgcatgccgagccggcggcgcaacgtcgtcgacccgctccagctgcggcccggggac
ttcgtggtgcacgagcagcacggcgtggggcggttcgtcgagctcgtgcagcggacgatc
gggaccggcgcgaacgcggcgacgcgcgagtacctcgtcatcgagtacgccagcagcaag
cgcggccagcccggcgaccggctgttcgtcccgagcgaccagctcgaccaggtgacgaag
tacgtgggcggcgaggcgccgacgctcaacaagatgggcggcggcgactgggccaagacg
aagggccgcgcgcgcaaggcggtcaaggagatcgcggccgagctcatccggctctacagc
gcgcgcatggcgacgccggggcacgcgttcggcgcggacaccccgtggcagcgcgagctg
gaggacgcgttcgcgtacgtcgagacgcccgaccagctcgcgacgatcgacgaggtcaag
gcggacatggagaaggcggtcccgatggaccgtctggtctgcggcgacgtcggctacggc
aagacggagatcgcggtgcgtgcggcgttcaaggccgtgcaggacggcaagcaggtcgcg
gtcctcgtgccgacgacgctgctggtacagcagcacctcgacacgttctccgagcggtac
tccgcgttccccgtgacggtgaaggcgctgtcgcggttccagtcggacaaggagtcgagg
gaggtcgtcgcgggcctcgccgacgggtccgtcgacatcgtcatcggcacgcaccggctc
atcacgggcgaggtgcggttcaaggacctcgggctcgtcatcatcgacgaggagcagcgg
ttcggcgtcgagcacaaggagacgctcaaggcgctgcggaccaacgtcgacgtgctcgcg
atgagcgcgaccccgatcccgcgcacgctcgagatggcggtcacggggatccgggagatg
tcgacgctcgccaccccgcccgaggagcggcaccccgtcctcacgttcgtcggcgcgtac
gacgagaagcagatcaccgccgcggtccggcgcgagctgctgcgcgagggccaggtgttc
tacgtgcacaacaaggtcgactcgatcgagcgggccgcgtcgcggatcgccgagctcgtg
ccggaggctcgcgtcgccgtggcgcacgggaagatgaacgagcaccagctcgagcgcgtc
atcgtcgacttctgggagaagaggttcgacgtcctggtctgcacgacgatcgtcgagacg
ggcctcgacatctccaacgccaacaccctgatcctcgagcgctcggacctgctcggcctg
tcgcagctccaccagctccgcggacgtgtcggccgtggacgtgagcgcgcgtacgcgtac
ttcctctacccgccggagaagccgctcaccgagaccgcgcacgaccggctgcagacgatc
gccgcgaacacggacctcggcgcgggcatggcggtcgcgatgaaggacctcgagatccgc
ggcgcgggcaacctgctgggcggcgagcagtccgggcacatcgagggcgtcggcttcgac
ctgtacatccgcatggtgggcgaggccgtggcgtcgttccgcggcgaccagccggaggag
ctgcccgacgtcacgatcgagctgccggtcgacgcgcacatcccgcacgactacatcgcg
cacgagcgcctgcgtctcgaggcctacaagaagatcgcggcagccgccgacgccaccgcg
ctcggcgaggtgcgggccgagctcgccgaccggtacggcgcggtccccgcggccgtggac
aacctgttcgaggtcgccgagttccgccagaaggtgcgggccgccgggctcaccgacgtc
acggcgcagggcaagttcgtgcggttcgcgccgatcgagctgcccgagtccgcgcagctg
cggctcaagcggctgtacccggggtcgatcctcaagcccgcgacgcgcacggtgctcgtg
ccgttcccgacgaccgcgcgcatcggcgggcggcctctgcacgggcgcgagctgctcgcg
tgggcgcgccagctggtcgacgcggtcgtgctcggcgacgtcgcggcggcggcgagcgtg
gggacgggcggccgctga
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