Cedecea neteri ND14a: LH86_02920
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Entry
LH86_02920 CDS
T03337
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
cen
Cedecea neteri ND14a
Pathway
cen02020
Two-component system
cen02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cen00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LH86_02920
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LH86_02920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cen03021
]
LH86_02920
Transcription machinery [BR:
cen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LH86_02920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AIR64065
LinkDB
All DBs
Position
609117..610550
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEIDTQE
MPESEAMDTREALEQKEMPDELPLDASWDEIYTAGTPSGTGTDYLDDELPIYQGETTQSL
QDYLMWQVDLTPFSDTDAAIATSIVDAVDETGYLTVPLEDILESLGHDDVSLDEVEAVLK
RIQRFDPVGVAARDLRDCLLIQLSQYAKETPWLAEARLIVSDHLDLLANHDFRTLMRVTR
IKEDALKEAMCLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHLARWVVELNADSIPRLKIN
QQYAAMSGSTRNDSDSQFIRSNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEHGEE
HMKPMVLADIAQAVDMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTSMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaattacggcttagccaacaacttgctatgacgccccagctgcag
caggctatccgtctgctacagctctcaacgttagagcttcagcaagaactccagcaggca
ctggacagtaatccattgcttgagcaaaccgacctacatgatgagatcgatactcaggaa
atgcctgagagcgaagcaatggacacccgtgaagccctcgagcagaaagagatgcccgat
gagctgccgctggatgccagttgggatgaaatttataccgccggtactccttcagggaca
ggaacggactatctggacgatgagctgccgatctaccagggtgaaacgacccagtcgcta
caggactacctgatgtggcaggtcgatctgacgccattttccgatacggatgccgctatt
gcgacgtctattgtcgatgcggtggatgaaaccgggtatctcaccgttccacttgaagac
attctggaaagcctgggccacgacgatgtgagccttgacgaagtggaagccgtcctcaaa
cgtatccagcgttttgatcccgtcggcgtggcagcacgggacttacgcgattgcctgtta
attcagctttctcagtacgccaaagagaccccatggctggcggaagcccggcttatcgtt
agcgatcatttagatctgctggcaaatcacgacttccggacgttgatgcgggtcacgcgc
atcaaagaggacgcgcttaaagaggccatgtgcctgattcagtctcttgatccccgccct
ggccagtcgatccaaacgggtgaaccagagtacgttatccctgatgtactggtgcgcaaa
cacctggcgcgctgggttgtagagcttaacgcagacagtatcccacgcctcaaaatcaac
cagcaatacgcagctatgagcggcagcacgcgcaatgacagcgactcacagtttatacgc
agtaacctgcaggaagcgaaatggttgattaaaagcctggaaagtcgcaatgatacgtta
ttacgcgtgagccgatgcattgtcgagcagcagcaggccttctttgagcacggtgaagag
cacatgaaaccgatggtgctggccgatattgctcaggcagtggacatgcacgagtcgaca
atctcgagggtgaccactcagaaatatttgcatagcccacgcggcatctttgaattgaaa
tatttcttctccagccacgtcaataccgaaggtggcggtgaagcctcctccacggcaatt
cgggcgctggtgaagaagttaatagctgcggaaaatcccgccaaaccgctgagcgacagt
aagttaacctcaatgctgtcggatcaaggtattatggtggcgcgccgcacagttgcgaag
taccgagagtctttatccattccaccgtcaaaccagcgtaaacagctggtgtga
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