Cardinium endosymbiont of Oedothorax gibbosus: CAOE_0498
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Entry
CAOE_0498 CDS
T08548
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ceng
Cardinium endosymbiont of Oedothorax gibbosus
Pathway
ceng03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ceng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAOE_0498 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ceng03400
]
CAOE_0498 (mfd)
Enzymes [BR:
ceng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAOE_0498 (mfd)
DNA repair and recombination proteins [BR:
ceng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAOE_0498 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
DUF815
Motif
Other DBs
NCBI-ProteinID:
CAH2559933
UniProt:
A0A8X6ENJ9
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All DBs
Position
1:complement(594949..598212)
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AA seq
1087 aa
AA seq
DB search
MQINDFIALYQKKEVVAKLTDYLKQDPKNIHLQGIQGSLDALLIAALQQNCNQVQLVVVE
NKEEALAIYGDLTQLLPAHSVLLFPSFAQKDDKYKTIQYKRSAIIHAISENQSAPLVVTH
ITALLEKILDPSLVATMHYRIDVGQTLSIQTLENMLGQKGFTKVDFVYSAGQFAIRGGII
DVYTMNQPSPYRIELWGDQVSTIRIFDPKDQKSFKKTNVAIILANHETAAEKQLVYTSFA
ACLPTGSCIWLKNKKKILEELKNTASTATRPLETMQSFMASIVPFHQILFGPEPSMVSDS
DLVISYNAEKQPCFQQNFTFLADDLYKRNQQNYDIYITATATGQFARLTTILEAQVRKTT
FTPLLVSLREGYIDHTAKIVCYSDHQIFNRYYRYQLPKRHSTTETLLADACQKLEIGDYV
VHSDHGVGRFSGLHSLHINGEKQEAIRLIYKNNDMVYVNVHELYKISKYTSKDGTTPSMH
TLGTSAWKRKKDSIKKQIKDIAKELITLYAERKKTKGFAFGEDTLLDAKLAASFCYEETP
DQAMAIASIKADMQRPTPMDRLVCGDVGFGKTEIAIRAAFKAAAHGKQAAVLVPTTILAL
QHYNSFINRLANLPIHVSYINRFKTKQEIEQTLADTASGKVDILIGTHKLLSNGVKFKDL
GLLIIDEEQKFGVSAKERLKKMRLNVDTLTLTATPIPRTLHFSLMGARDLSILTTPPTNR
LPIQTKLHRFDDKLIKEAIEDEIAREGQVFFVHNKVSNINAIAQNLSDLLPTARICVAHG
QMAGSMLEEKILQFIVGRYDILVATSIIESGMDMPNVNTIIVNDSHLLGLSDLHQMRGRV
GRSNVQAFCYLLIPENITLTPEAKLRLAALEECSALGDGFKLAMRDLDIRGVGDLLGASQ
SGFISDIGFETYCKILEEAVDEVKHTDFKTLFEARTLCNACSIETDCEALLPSEYVQSTA
QRMTLYTRLNALKNINQLTRFKEELIDRFGSLPTATETLLETVQLRWESERIGFQKISFK
SQRLHCYLSADFQKRNLDMWNNIMRYMQQHPACCQLKRMGQNLILTITGKIHSVLAAKEL
LATIGAP
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
ttgcagatcaacgattttatagcactgtatcaaaaaaaagaagttgtagccaagcttaca
gactacctaaaacaggatccgaaaaatattcacctacaaggcattcaaggcagcttagat
gcgttactgattgcagcactgcaacaaaattgcaaccaggtacagcttgttgtggtggaa
aacaaagaagaagcattggccatttatggagatttaacccagctattgcccgcccattct
gtgctgctctttcctagtttcgcacaaaaagacgataagtataaaaccattcaatacaaa
cgatccgccatcatacacgccataagcgaaaaccaatctgctccattggtagtcacccat
ataacggcacttttagaaaagatcttggatccatccctggttgccactatgcattacagg
atagatgtaggccaaacgctatcgatccaaacattggaaaacatgcttgggcaaaaaggc
tttacaaaagtagattttgtctatagcgcaggtcagtttgccatacggggcggcattatt
gatgtttatacgatgaaccaaccttctccctaccgaatagaactatggggtgatcaagtt
tccaccatccgtattttcgaccctaaagaccaaaagtcttttaaaaagacaaatgtggca
attattttagccaatcacgaaacagcagctgaaaaacagttggtctatacctcctttgca
gcttgcctaccaacaggcagttgtatttggctaaaaaataaaaaaaagattttagaggaa
ttgaaaaatactgcatcaaccgctacccgtcctctagagactatgcaaagctttatggca
tccattgtgccctttcatcaaattctatttgggccagagccatctatggtttcagatagc
gacctcgtaatatcatataatgctgaaaaacagccttgttttcaacaaaactttaccttt
ctagcggatgatctctacaaaagaaatcagcagaactatgatatatatattacggctact
gctacagggcaatttgcacgattgactaccattttagaagcccaagtgcgcaaaacaact
tttacgccattgctggtgagtttacgggaaggttacatagatcatacagctaaaatagtc
tgctatagtgatcatcaaatttttaatagatactatagataccaactgcccaaacgacat
tccacgacggaaaccttacttgccgatgcatgtcaaaaactagaaattggcgattatgtg
gtgcatagtgaccatggcgttggccgattttctggattacattccttacatatcaatggc
gaaaagcaagaagccattcgactgatctataaaaacaacgacatggtgtacgtaaacgta
cacgaattatacaaaatcagcaaatatacgagcaaagatggcacaacgcctagcatgcat
accttaggcacatctgcctggaaacgtaaaaaagatagcattaaaaaacagatcaaagac
attgctaaagaactgattaccctctatgcagaacgtaaaaaaacgaaagggtttgctttt
ggggaagatacgctactagatgcaaagttagccgcttctttctgttatgaggaaacccca
gaccaagctatggctattgcctctattaaagcagatatgcaacgccctacccccatggat
cgactggtttgtggagatgtgggatttggcaaaacagaaatagccattcgtgcagctttt
aaagcagcagcacatggcaaacaagcagctgtactagtgcctactactattttagcacta
caacactacaactcttttatcaataggctcgctaacttaccgattcatgttagttatatc
aatcgatttaaaaccaaacaagaaatcgagcaaacgcttgccgatacggcttctggaaag
gtggatattctaattggtacacataaactactgtccaatggtgttaagtttaaagattta
ggtctgctgattatcgatgaagaacagaaatttggtgtaagtgccaaagaaagattgaaa
aagatgcgtttgaatgtagatacactcaccttaaccgctacgcctattccacgaaccctc
catttttccctgatgggtgcaagggatttaagtattctgactactccccctaccaataga
ctgcctatccaaacaaagttgcatcgctttgatgataagctcattaaagaagccatagaa
gatgaaatcgctcgtgagggacaagtcttttttgtgcacaataaggtaagcaatatcaat
gccatcgcacaaaatctatcagacttactgcccacagcacgaatctgtgtagcgcatggt
caaatggccggatctatgctagaggaaaaaatattgcagtttatagtaggtcgctacgat
atactggtcgcaactagcatcatagaatctggaatggatatgcccaatgtgaataccatt
attgtcaatgatagccatcttttggggctttctgatttgcatcaaatgcgtggaagagtg
ggacgctccaatgtgcaagctttttgctacctattgattccagaaaatataacccttacg
ccagaagccaagctaagactggctgcattagaagagtgttcagcattaggagatggcttt
aaacttgctatgcgagatttagacatacgtggtgtgggtgatctactgggggcatcgcaa
agtggatttatatcggatattggctttgagacctattgtaaaatattagaggaggctgta
gacgaggtaaaacataccgattttaaaacattgtttgaagctagaacgctctgcaatgcg
tgttctattgaaacagattgtgaagcgcttttaccatctgaatatgtacaaagtacagcg
cagcggatgacgctttacaccaggctcaatgcgcttaaaaatatcaaccaactcacacgt
tttaaagaagagttaatagacaggtttggttcattacctactgctacagaaaccctattg
gaaacagtacaactccgatgggaatcagaacggattgggtttcaaaaaatttcatttaaa
agccaacgtttacactgctacctaagcgctgattttcaaaaaagaaatttggacatgtgg
aataacatcatgcgctatatgcaacaacaccccgcttgttgtcaactaaaaagaatgggg
caaaacttaatacttaccattactggaaaaatccatagtgtccttgcggcaaaggagcta
ctggctactataggagctccttaa
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