Cellulosimicrobium sp. TH-20: B8281_10560 Help Entry B8281_10560       CDS       T04804                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism cet  Cellulosimicrobium sp. TH-20 Pathway cet03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:cet00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     B8281_10560  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cet03400]     B8281_10560 Enzymes [BR:cet01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      B8281_10560 DNA repair and recombination proteins [BR:cet03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      B8281_10560 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C RNA_ligase DNA_primase_S DNA_ligase_OB_2 Motif Other DBs NCBI-ProteinID:  ARK05108 UniProt:  A0A1W6DQD0 LinkDB All DBs Position complement(2397923..2400607) Genome browser AA seq 894 aa AA seqDB search MATTSSRAGETVNVGGHRLRLTNLDKVLYPATGTTKADVLAYLAAVADVMLPHCANRPAT RKRWPDGVDGQVFFQKNAGQGVPSWVRTRRIQHKSSANDYVLVNDLATLTWLGQTASLEL HVPQWQFGRTGAHLDPDRLVLDLDPGPGAGLAECAEVARQARQILQGMGLEPLPVTSGSK GIHLYAALDGKQDAAAVSAVAHELARYLEAEHPDLVVSDMKKSLRGGKVLVDWSQNNGNK TTIAPYSLRGREHPTVAAPRTWEELDDPDLRHLDLDEVVERVRTLGDPLAALTQGHLSAL EPTPARMATFERKGGAASGGDAADGGTDDERPDRLHRYRSMRDAGRTPEPVPDEAPPPSA GNSFVIQEHHARRLHWDFRLEHDGVLVSWALPRGEPTDPKKNHLAVQTEDHPLAYGSFEG TIPKGEYGAGEVTIWDAGTYELEKWRDGEEVIVTLHGEQHGTRRLALIHTGGRDGRDEDN WLIHLMAPRPSRPGESARGRGAGGGEEAPGLPSAARPSPLPPDPPRPGTSSPPPASRSAR GASSPDHDDTPEPRPARTDWRPMLASPASAGDLHDGDAWAFEMKWDGFRTLAHVSEGRVR LVSRSGKDMSVTYPELQALAEQVPAEALPVVLDGEIVALDARGRPSFRRLQQRANIAKPG DVAAARRRVTVDLMVFDVLETGGRSLAKRPYDERREVLEDVLRDAVAPVHVPPVFDGDLE AAMETSRRLGLEGVVAKRRDGTYSSGRRSALWLKLKHAQSQEVVVVGWRPGHGERTHLVG SLLLAVPDDGRLVYVGRVGSGFTDAERRDLVAELDRIGRTTPPAVGVPREDARDAHWVSP RRVAEVVYAEWTGAGEGDGDDVPFGKLRHPVWKGWRRDKSPDDVVLETPATVEG NT seq 2685 nt NT seq  +upstreamnt  +downstreamnt atggccaccacatccagccgggcgggcgagacggtgaacgtcggtggtcaccgcctgcgc ctcaccaacctggacaaggtcctctaccccgccaccggcacgacgaaggccgacgtcctc gcgtacctcgcggccgtcgccgacgtcatgctcccccactgcgcgaaccggcccgcgacg cgcaagcggtggcccgacggcgtcgacggccaggtgttcttccagaagaacgcgggccag ggcgtcccgtcctgggtgcgcacgcgacgcatccagcacaagagcagcgccaacgactac gtgctggtgaacgacctcgcgaccctcacgtggctcggccagacggcgtcgctcgagctc cacgtcccgcagtggcagttcggtcgcaccggggcgcacctcgaccccgaccgcctcgtc ctcgacctcgaccccggcccgggggccgggctggccgagtgcgcggaggtcgcgcgccag gcgcggcagatcctccagggcatgggcctcgaacccctgcccgtgacgagcgggtccaag ggcatccacctgtacgccgcgctcgacggcaagcaggacgcggcggccgtctccgccgtc gcgcacgagctcgcccgctacctcgaggccgagcaccccgacctcgtcgtgagcgacatg aagaagtcgctgcgcggcggcaaggtgctcgtggactggagccagaacaacggcaacaag acgacgatcgcgccctactcgctgcgcgggcgcgagcaccccaccgtcgcagcgccccgc acctgggaggagctcgacgacccggacctgcgccacctcgacctcgacgaggtcgtcgag cgcgtgcgcaccctgggcgacccgctcgccgcgctcacgcaggggcacctctccgcgctc gagcccacgcccgcgcgcatggcgacgttcgagcgcaaggggggtgcggcgtcgggcggc gacgccgcggacggcgggacggacgacgagcggcccgaccgcctgcaccggtaccgctcc atgcgcgacgccgggcgcacgcccgagcccgtcccggacgaggcgccgccgccgagcgcg ggcaacagcttcgtcatccaggagcaccacgcccgccgcctgcactgggacttccggctg gagcacgacggcgtgctcgtgagctgggcgctcccgcgcggcgagccgaccgacccgaag aagaaccacctcgccgtccagaccgaggaccacccgctcgcctacggctcgttcgagggc acgatcccgaagggcgagtacggcgccggcgaggtgaccatctgggacgccggcacgtac gagctcgagaagtggcgcgacggcgaggaggtcatcgtcacgctccacggcgagcagcac ggcacccgccgcctcgcactcatccacacgggcggccgcgacggccgcgacgaggacaac tggctgatccacctcatggcgccgaggccgagccgtccgggcgagagcgcgcggggtcgg ggcgccgggggtggggaggaggcgccgggtctaccatccgcggctcgtccctcgccgctc ccgccagacccgccacgacccggcacctcctccccacccccggcttcgcggtcggctcgc ggcgcgtcctcgcccgaccacgacgacacgccggagccacggcccgcgcggacggactgg cggccgatgctcgcgtcgcccgcgtcggcgggcgacctgcacgacggcgacgcgtgggcg ttcgagatgaagtgggacgggttccggacgctcgcgcacgtgtccgaggggcgcgtgcgg ctcgtgagccgctcgggcaaggacatgtcggtgacgtacccggagctgcaggcgctcgcg gagcaggtcccggccgaggcgctgccggtggtgctggacggggagatcgtcgcgctcgac gcgcgggggcggccgagcttccggcgtctccagcagcgcgcgaacatcgccaagccgggg gacgtcgccgcggcgcgacggcgcgtcacggtcgacctcatggtgttcgacgtcctggag accggcgggcggtcgctcgcgaagcgcccgtacgacgagcggcgcgaggtgctggaggac gtgctgcgcgacgccgtcgccccggtgcacgtgccgccggtcttcgacggggacctggag gccgcgatggagacgtcgaggcggctcgggctcgagggcgtcgtcgcgaagcggcgcgac gggacgtactcgtcggggcgccgctcggcgctgtggctgaagctcaagcacgcgcagtcg caggaggtcgtcgtggtcgggtggcggccgggccacggcgagcggacgcacctcgtcggg tccctgctgctcgccgtgcccgacgacggccgcctcgtctacgtgggccgggtcgggtcg ggcttcacggacgccgagcggcgtgacctggtcgccgagctcgaccggatcggtcgcacg acgccgcccgcggtgggcgtgccgcgcgaggacgcgcgcgacgcgcactgggtgtcgccg cggcgggtcgcggaggtcgtctacgccgagtggacgggcgccggggagggcgacggcgac gacgtcccgttcggcaagctgcgccaccccgtgtggaaggggtggcgccgggacaagtcg ccggacgacgtcgtgctggagacgcccgcgacggtcgagggctga

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