Cellulomonas fimi: Celf_0800
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Entry
Celf_0800 CDS
T01490
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfi
Cellulomonas fimi
Pathway
cfi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Celf_0800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfi03400
]
Celf_0800
Enzymes [BR:
cfi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Celf_0800
DNA repair and recombination proteins [BR:
cfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Celf_0800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEE44940
UniProt:
F4H018
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Position
880139..881614
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AA seq
491 aa
AA seq
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MPGSKPLDEYRAKRDPARTREPVPPPDAPLPRGDGRTFVIQEHHARALHWDLRLERDGVL
VSWAVPKGLPQEPGTNHLAVHTEDHPMEYATFEGEIAAGEYGAGHMTVWDRGTYETVKWS
DREVQVVLHGERVDGRYVLFRTRGRGGGARDDGRSWMVHRMDPPTRTDWTPLPELVRPMA
AVPGELPGDDAAWAFEMKWDGVRAVAYVDGGRVRLMSRNDLDVTRSYPEVAGLGEQLGSV
QAVLDGELVTFDQRGAPDFGRLQQRMHVADPAVARRLAQSVPVVYLLFDVLHLDGRPTVD
LPYDERRRLLEDLGLAGRSWQTPPAFDGPGAAILAASAENGLEGVLAKRRTSPYRPGRRS
PDWVKVKHVRMQEVVLAGWKPGKGARAETLGALVLGVPDGDGVLRPAGGVGTGFTRRALD
DLLRRLAPLETATSPFVDRLPAAETRDVHWVRPELVGEVAFAGWTSDGRLRHPSWRGLRP
DKDPRDVVREA
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtcgaagcccctcgacgagtaccgcgccaagcgggacccggcgcgcacgcgc
gaaccggtgccgccgccggacgcgccgctcccgcggggcgacggccgcacgttcgtgatc
caggagcaccacgcccgcgcgctgcactgggacctgcgcctggagcgcgacggcgtgctg
gtctcgtgggccgtgccgaagggcctcccgcaggagcccgggacgaaccacctcgcggtg
cacaccgaggaccacccgatggagtacgcgacgttcgagggcgagatcgcggcgggggag
tacggcgccgggcacatgacggtgtgggaccgcggcacctacgagacggtgaagtggtcg
gaccgcgaggtgcaggtcgtgctgcacggcgagcgcgtcgacggccggtacgtgctgttc
cggacccgcgggcggggtggcggcgcgcgcgacgacggccggtcgtggatggtgcaccgc
atggacccgccgacgcgcaccgactggacgccgctgcccgagctcgtgcgccccatggcg
gccgtgcccggcgagctgccgggtgacgacgcggcgtgggcgttcgagatgaagtgggac
ggcgtccgggccgtcgcctacgtcgacggcggccgggtccggctcatgtcgcgcaacgac
ctggacgtcacgcgctcgtacccggaggtcgccgggctcggcgagcagctcggctcggtg
caggccgtgctcgacggggagctcgtcacgttcgaccagcgcggcgcccccgacttcggc
cgcctccagcagcgcatgcacgtcgccgacccggccgtcgcgcgccgactcgcgcagtcc
gtgcccgtcgtctacctgctgttcgacgtgctgcacctcgacgggcgccccaccgtcgac
ctcccctacgacgagcgccgccggctgctggaggacctcgggctcgccgggcgctcctgg
cagacgcccccggcgttcgacggacccggtgccgcgatcctcgcggccagtgccgagaac
gggctcgagggcgtgctggccaagcgacggacctcgccgtaccggcccggccgccgctcg
ccggactgggtcaaggtcaagcacgtccgcatgcaggaggtcgtgctggccggctggaag
ccgggcaagggggcgcgcgcggagaccctcggtgcgctcgtgctcggcgtgcccgacggc
gacggggtgctgcggcctgcgggcggcgtcggcaccgggttcacgcgccgtgccctcgac
gacctgctgcgccgcctcgcgcccctcgagaccgcgacgtcgccgttcgtcgaccgcctg
cccgccgccgagacgcgcgacgtgcactgggtccgtcccgagctcgtcggggaggtcgcg
ttcgccggctggacgtccgacggccggctccggcacccgtcctggcgcggcctgcgcccg
gacaaggacccgcgcgacgtcgtccgggaggcctga
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