Cytobacillus firmus: NAF01_01875
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Entry
NAF01_01875 CDS
T08260
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfir
Cytobacillus firmus
Pathway
cfir03030
DNA replication
cfir03410
Base excision repair
cfir03420
Nucleotide excision repair
cfir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NAF01_01875 (ligA)
03410 Base excision repair
NAF01_01875 (ligA)
03420 Nucleotide excision repair
NAF01_01875 (ligA)
03430 Mismatch repair
NAF01_01875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfir03032
]
NAF01_01875 (ligA)
03400 DNA repair and recombination proteins [BR:
cfir03400
]
NAF01_01875 (ligA)
Enzymes [BR:
cfir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NAF01_01875 (ligA)
DNA replication proteins [BR:
cfir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NAF01_01875 (ligA)
DNA repair and recombination proteins [BR:
cfir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NAF01_01875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NAF01_01875 (ligA)
MMR (mismatch excision repair)
DNA ligase
NAF01_01875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NAF01_01875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
URT71263
LinkDB
All DBs
Position
358136..360142
Genome browser
AA seq
668 aa
AA seq
DB search
MDLQLAEKKVKDLHNLLNQYNYEYHVLDQPSVPDAEYDRLMRELIELEEQFPELKTEDSP
TQRVGGEILDMFEKVEHQSQMLSLGNAFNEQDLRDFDRRVRQGAGENVSYVCELKIDGLA
VSLRYEDGLFILGATRGDGSIGENITANLKTIRSIPLRLKENVTMEVRGEAFMPRRSFEK
LNKAKEENGEEPFANPRNAAAGSLRQLDPRLAAKRNLDIFVYGIANAGNTGIVSHSEGLD
FLDSLGFKTNKERKRCESIEEVIEYVQGWTHKRPDLSYDIDGIVIKVDSLEEQEQLGATA
KSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQRASLHNEDLI
REKDIKIGDQVVVKKAGDIIPEVVNVLADRRTGEEQDFNMPTHCPECESELVRLDGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFAENLIKDVADIYKLTYEQLIQL
ERMGEKSVNNLLQAIQNSKGNSLEKLLFGLGIRHVGAKAAKTLAQEFSHMEALEKTSRDD
LTAINEIGEKMADSIVSFFEQEEAHELIAELKAAGVNMAYNGPKPVSAESSDSFFAGKTV
VLTGKLEIMSRNEAKDKIEALGGKVSGSVSKKTDVVIAGEEAGSKLTKAQELGVEVWNEE
RLVEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccttcaattggcagaaaaaaaggtgaaagatctgcacaaccttttgaatcagtat
aattatgagtatcatgttcttgatcagccgtctgttccagatgctgaatacgataggctg
atgagggaactgattgagcttgaagaacaattccctgaactgaaaacagaggattctccc
acacagagggttggaggggaaatcctcgatatgtttgaaaaagtggagcatcagtcgcag
atgctcagtttgggaaatgccttcaacgaacaggatttaagagactttgaccgccgtgtc
cgccagggtgccggagaaaatgtttcttatgtatgtgaattgaaaattgatgggctggct
gtttccctccgctatgaggatggattatttattcttggtgccacacgcggtgacggctcc
attggcgagaatattaccgctaacctaaagactatccgttcgatacctctccggctgaaa
gagaacgtcacgatggaagtccgcggtgaggccttcatgccccgacgctcttttgagaaa
ttgaataaagcaaaagaagagaatggggaggagccgtttgctaatccaaggaatgccgca
gcaggttccttaaggcagctggatccgcgccttgcagcaaagcgcaatctcgatattttt
gtctatggcatagcgaatgcggggaatacagggattgtatcccacagtgaaggtctggat
tttctggatagcctcggatttaaaacaaataaagaacgcaaaagatgtgaaagcattgag
gaagtaattgaatatgtacagggatggacccacaaacgtccggatctgtcctatgacatt
gatggtattgtaatcaaagtcgattcactggaggagcaggagcaactgggcgctacggcg
aaaagcccacgctgggccatagcttataaattccctgcagaagaggttgttactacactt
agggatatagaattgagcgttgggcgaacgggcgtagttacgccaactgcgcttctggag
cctgtccgtgttgccgggacgactgtccagagggcttcacttcataacgaagatttgatc
cgcgaaaaagatattaagattggcgatcaggtggttgtgaaaaaagcgggagatattatc
cccgaagttgtgaatgtactggcagacaggagaacgggtgaggaacaggattttaatatg
ccgacacattgtccggaatgtgagagcgaactggtccgtcttgatggtgaagtggctttg
cgctgcatcaatccaaagtgcccggcacaaatcagggaaggccttattcattttgtttcc
cgcaacgccatgaacattgatggccttggtgaaaaggtgatcagccaattatttgccgaa
aatctgattaaagatgtggcagatatctacaaattaacgtatgaacagcttatccagctc
gaacggatgggtgaaaaatctgtaaacaatcttcttcaggcgattcaaaactccaaaggg
aattctcttgaaaagttgttatttggcctgggaatccgccatgtgggagcgaaggcagcc
aaaacgcttgcccaggagtttagccatatggaggcacttgaaaaaacatcccgggacgat
ttaacagcaataaatgaaattggtgaaaaaatggcggactccattgtttccttctttgaa
caggaggaagcccatgaactgattgccgagctgaaagcagccggagtcaacatggcttat
aatgggccaaagccagtttctgccgaaagctcagatagcttttttgcagggaaaacggtc
gttctgacaggaaagcttgaaatcatgagccgaaatgaagcaaaagataaaatagaggcg
cttggcggcaaagtatccggaagcgtcagcaagaaaacggatgttgtaatcgccggagaa
gaagccggatctaaactgacgaaggcccaggagctgggtgtagaagtttggaacgaggag
agactggttgaagaattaaataagtaa
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