Cellulomonas flavigena: Cfla_1903
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Entry
Cfla_1903 CDS
T01230
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfl
Cellulomonas flavigena
Pathway
cfl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Cfla_1903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfl03400
]
Cfla_1903
Enzymes [BR:
cfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Cfla_1903
DNA repair and recombination proteins [BR:
cfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Cfla_1903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADG74800
UniProt:
D5UEZ0
LinkDB
All DBs
Position
2117371..2118306
Genome browser
AA seq
311 aa
AA seq
DB search
MEPMLATPAPARAALPHGPGWVFEVKWDGVRVLADAHDDSVRLSSRNERDVTSAYPELRG
LAALGDVLLDGEVVLMEAGRPSFTALAERMHVRDTRRAAALAAARPVTYLVFDVLRHDGL
DLTALPLSERRAVLDGLVLPAHVQASPWYDDGDDLWRVTAGHGLEGVVAKRRDAPYRPGR
RSPDWVKAAHRRARTAVVGGWRPESTGTGRLGAVLLGAPDAAGGLRYLCRAGSGLGGPAA
REMRALLAPLERATSPFRDDVPAVDARGTVWCDPVVVVEALYLARTPTGRLRQPVVRGVR
TDTTADPWEQP
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
gtggagcccatgctcgccacccctgcgcctgcccgtgcggcgcttccgcacggcccgggc
tgggtgttcgaggtcaagtgggacggggtgcgggtgctcgcggacgcccacgacgacagc
gtgcgcctgagcagccgcaacgagcgggacgtcacgtcggcgtaccccgagctgcgcggt
ctggcggcgctcggcgacgtgctgctcgacggcgaggtcgtgctcatggaggccggccgg
ccgtcgttcacggcgctcgcggagcggatgcacgtgcgcgacacccggcgcgcggcggcc
ctggcggcggcccgtccggtgacctatctggtgttcgacgtgctgcggcacgacggactc
gacctcaccgcgttgccgctgtcggagcgacgcgcggtgctcgacggcctcgtgctgccg
gcgcacgtgcaggcgtcaccctggtacgacgacggcgacgacctgtggcgcgtcacggcg
ggacacgggctcgagggcgtcgtggccaagcgacgcgacgcgccgtaccgacccggacgg
cgctcgcccgactgggtgaaggcggcccaccgccgagcccgcacggcggtcgtcggcggg
tggcgaccggagtcgaccggtacgggccggctgggggccgtgctgctgggcgcacccgac
gcggccggcgggctgcgctacctgtgccgcgcgggttccgggctcggcggccccgccgcg
cgggagatgcgcgccctgctcgcgccgctcgagcgtgccacgagcccgttccgcgacgac
gtccccgccgtcgacgcgcgcggcacggtgtggtgcgaccccgtcgtggtcgtcgaggcg
ctgtacctggcgcgcaccccgacaggccggctgcgccagccggtcgtgcgaggggtccgc
accgacaccaccgccgacccctgggagcagccgtga
DBGET
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