Collimonas fungivorans: CFU_1974
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Entry
CFU_1974 CDS
T01583
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFU_1974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfu03400
]
CFU_1974
Enzymes [BR:
cfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFU_1974
DNA repair and recombination proteins [BR:
cfu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFU_1974
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEK61805
UniProt:
G0A8U2
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Position
2319679..2322171
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AA seq
830 aa
AA seq
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MSDPLTSYRKKRDFTVTPEPSTAGQASRGGRAFVIQKHWASRLHYDFRIELGGAMKSWAI
PKGPSLDPKDKRMAVHVEDHPISYNSFEGDIPAGQYGAGKVIIWDKGSWEAVDGDPLKQY
RSGHLKFELRGHKLHGRWALIRMKPDSQKKEAWLLIKEKDDYARPALTYSVVDEMPDSVA
GLAVKEERKPAPVAASPRKHAKMPAGAVKAALPTHLAPQLATLADAAPGGAGWLYEIKFD
GYRLLARVSGKSLRLYTRNGNDWTAKLPALTAALQRMKLPAGWYDGEIVVLDERGLPDFQ
RLQQAFDSAGSAAAVSYYLFDLPFYDGYDMRGVPLRERRKLLQSLFNTKTPAPVRLSDAF
DVSAKDIVASACRMGLEGVIGKRQDSLYVTRRSTDWIKLKCTQRQEFVIGGYTDPQGSRI
GIGSLLLGVHDAHGKLRYAGNVGTGFDARGLAALANKLKAISAASSPFSGATGRYRKVHW
VEPLLLAEVSFAEWTADGHIRHSVFHGLRSDKQPQAINRENAMHIPAAEPQSKTLESLKV
THGERVIDAASGITKIELIRYYGLVAPLMLPHLKGRPVSLLRAPDGLAGQLFFQKHLGEI
KMHGVRQLATALDPGHPPLLEIAGAGGLLSAAQMNVLEFHTWNALKTSIMKPDRMTFDLD
PGEKTTWESVQQAALLLRAFLQQLELEAVIKTSGGKGLHVVVPIKKQHGWDTVKDFSHAI
VDHLAGALPDRFVARSGARNRVGKIFVDYLRNGFGATTAAAWSVRARPGLGVSVPIGWDE
LEKIKGGAHWTVADIHARLDQGNAPWEANGSRPQSLARPMKILEFKPARK
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacccattgacaagctacaggaaaaagcgggatttcaccgtcaccccggagccg
tctacggcagggcaggccagccgcggcgggcgcgcgttcgtcatacaaaagcattgggcc
tcgcggctgcactacgatttccgcatcgaactcggcggcgcgatgaaaagctgggcgatt
cccaagggacccagcctggatcccaaggacaagcgcatggcggtgcatgtcgaggaccat
ccgatttcctacaacagcttcgagggggacattccggccggccaatatggcgccggcaaa
gtcatcatatgggacaaaggcagctgggaagctgtcgacggcgacccgctcaagcaatac
cggagcggccatctgaaattcgaattgcgcggacacaaattgcacgggcgctgggccctg
atacggatgaaaccggatagccaaaaaaaagaagcctggctgttgatcaaggaaaaagac
gactacgcgcggccggcgctgacgtacagcgttgtggatgaaatgccggacagcgtcgcc
ggactggctgtcaaagaagaacggaaaccggccccggttgccgccagcccgcgcaagcac
gcaaaaatgccggctggcgcggtcaaggccgcattgcccacgcatctggcgccgcagctg
gcgaccctggctgacgccgcacccggcggcgcgggctggttatatgaaatcaagttcgat
ggttatcgtctgctggcccgggtcagcggcaaatccttgcgcttgtacacgcgcaacggc
aatgactggaccgcaaagttaccggctttgacagctgcgctgcaacggatgaaattgccg
gcaggctggtatgacggcgaaatcgtcgtgcttgatgagcgcggcttgcccgatttccag
cgcctgcagcaggccttcgatagtgccggcagcgctgcagccgtcagctactacctgttc
gacctgcctttttacgatggttacgatatgcgcggcgtgccgctgcgtgagcggcgcaag
ctgctgcaatccctgttcaacacaaaaacgccggcgccggtccgcctcagcgatgcgttt
gacgtcagcgccaaggatatcgtcgcctccgcctgccggatgggcctggaaggagtgatc
ggcaaacggcaggactccctgtatgtcacgcgccgctccaccgactggatcaagctgaaa
tgcacccagcgccaggagtttgtcatcggcggctacaccgatccgcaaggctcgcgcatc
ggcataggttcgctgctgctgggagtgcacgatgcccacggcaagctgcgctacgcggga
aatgtcggcaccggcttcgatgcgcgcggcctggcggcgctggcaaacaaactcaaggca
atatccgccgccagcagtcctttcagcggcgccaccggacgctatcgaaaagtgcattgg
gtagagccgctgctgctggcggaagtgtcgttcgccgaatggaccgccgacggccatatc
cgccattccgtgttccatggcttgcgcagcgataaacagccgcaggcaatcaaccgggag
aacgccatgcatattcctgccgcagagccgcaaagcaagacgctcgaatcgctgaaagtc
acgcacggcgaacgcgtgatcgacgctgccagcggcatcaccaaaatcgagctgatacgc
tattacggcctggttgcgccgctgatgctgccgcacctgaagggccggccggtgtcattg
ctgcgggccccggacgggctcgccggccagctgttcttccagaagcacctgggcgagatc
aagatgcatggcgtgcgccagctggcgacggcgctggaccctggccatccgcccttgctg
gaaatcgccggagccggaggactgctatcggcggcgcaaatgaatgtgcttgaattccat
acatggaatgcgctcaagacgtccatcatgaaacccgaccgcatgactttcgatctcgat
cccggcgaaaaaaccacatgggaatcggtgcagcaagctgctctgctgctgcgcgctttc
ctgcagcaactggagctggaggccgtgatcaagaccagcggcggcaaaggtctgcacgtg
gtggtgccgatcaagaaacagcatggctgggatacggtgaaggatttttcgcatgccatc
gtggatcatcttgccggcgctttgccggatcgttttgtcgccaggagcggcgcgcgcaac
cgggtcgggaaaatattcgtcgattacctgcgcaacggattcggtgcgacgacggcggcg
gcctggtcggtgcgggcccggccgggccttggcgtgtccgtgccgataggctgggatgag
ctggaaaaaatcaagggcggcgcgcactggaccgtggccgacatccatgcgcggctggac
cagggaaatgcgccatgggaagcaaatggctccaggccgcaaagcctggcgcggcccatg
aaaatcctggaattcaaaccggcgcggaaataa
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