KEGG   Collimonas fungivorans: CFU_3225Help
Entry
CFU_3225          CDS       T01583                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cfu  Collimonas fungivorans
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:cfu00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    CFU_3225
   03410 Base excision repair
    CFU_3225
   03420 Nucleotide excision repair
    CFU_3225
   03430 Mismatch repair
    CFU_3225
Enzymes [BR:cfu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CFU_3225
    6.5.1.6  DNA ligase (ATP or NAD+)
     CFU_3225
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CFU_3225
DNA replication proteins [BR:cfu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CFU_3225
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CFU_3225
DNA repair and recombination proteins [BR:cfu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CFU_3225
   NER (nucleotide excision repair)
    Other NER factors
     CFU_3225
   MMR (mismatch exicision repair)
    Other MMR factors
     CFU_3225
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
3776086..3776970
Genome map
AA seq 294 aa AA seqDB search
MHALSPNVSPILARFLSTLLLCLFFGRPSIAAPATPPAAPPLMLANIYHPGITLADYWVS
EKLDGVRGYWDGEKLLTRGGQRINAPPWFTAGWPKTPLDGELWAGRQQFSHAVSTVRREM
PDDAAWRRMRFMVFDLPAHPGSFDQRLAALQSTLAKLAVPWLQPVAQSKLNDHAALRRLL
QQTVRQGGEGLMLHRGASLYRAQRSDDLLKVKTHEDAEARVIAHLPGKGKYQGMLGALLV
ETPDGLRFKLGSGFSDEQRRRPPALGSVVTYRFRGLNDSGIPRFASFMRVYEQQ
NT seq 885 nt NT seq  +upstreamnt  +downstreamnt
atgcatgcgttatcgcccaatgtttcgcccatcctcgccagattcctgagtaccctgctg
ctttgcctctttttcggccggccatccatcgcagcgccggcgacgcctcccgcagcaccg
ccgctgatgctggccaatatctaccatcccggtatcaccctggccgactattgggtcagc
gaaaaactggacggcgtgcgcggctactgggacggcgagaaattgctgacgcgcggcggc
cagcggataaacgccccgccctggttcaccgccggctggccaaaaacgccgctggacggt
gaactctgggccggccgccaacagttcagccatgcggtttccaccgtacgccgcgagatg
cccgacgatgccgcctggcgccgcatgcgcttcatggtgtttgacctgccggcgcatccc
ggcagtttcgaccaacgcctggccgccttgcaaagcacgctcgccaaacttgccgtcccc
tggctgcagccggtggcgcagagcaagctgaacgaccacgcggccttacggcgtttgctg
cagcaaaccgtcaggcaaggcggcgaaggcttgatgctgcaccggggcgcgtcgctgtac
cgggcgcaacgcagcgacgacctgctcaaggtaaaaacccatgaagatgccgaagccagg
gtcatcgcccacctgcccggcaaggggaaataccagggcatgctgggcgctttgctggtg
gaaacgccggacggcctgcgtttcaagctcggcagcggcttcagcgacgagcagcggcgc
cggcctccggcccttggcagcgtcgtgacttaccgcttccgtggcttgaacgacagcggc
ataccgcgcttcgccagcttcatgcgggtctacgaacaacagtag

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