KEGG   Cystobacter fuscus: CYFUS_007856
Entry
CYFUS_007856      CDS       T05065                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cfus  Cystobacter fuscus
Pathway
cfus03030  DNA replication
cfus03410  Base excision repair
cfus03420  Nucleotide excision repair
cfus03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cfus00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CYFUS_007856
   03410 Base excision repair
    CYFUS_007856
   03420 Nucleotide excision repair
    CYFUS_007856
   03430 Mismatch repair
    CYFUS_007856
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cfus03032]
    CYFUS_007856
   03400 DNA repair and recombination proteins [BR:cfus03400]
    CYFUS_007856
Enzymes [BR:cfus01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CYFUS_007856
DNA replication proteins [BR:cfus03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CYFUS_007856
DNA repair and recombination proteins [BR:cfus03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CYFUS_007856
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CYFUS_007856
   MMR (mismatch excision repair)
    DNA ligase
     CYFUS_007856
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CYFUS_007856
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT DNA_ligase_ZBD HHH BRCT_2 YiiM_3-alpha LysW-like_globular RUBY_RBDX
Other DBs
NCBI-ProteinID: ATB42378
UniProt: A0A250JFK2
LinkDB
Position
9821922..9823949
AA seq 675 aa
MTASKTADAARIGQLRKELAYHNHRYYVLDSPEVSDAEYDRLMRELQELESRHPDLVTAD
SPTRRVGGAPAEKFEKVRHRVAMLSLANVFDDEGLSDFDERIRRQTGLAQVGYVCEPKLD
GLAITLTYEQGRFVRGATRGDGTEGEDVSANLRTLRGLPTELLPQDGVKAPGMIEVRGEV
FISKKDFKRLNDKREEEGEPLFANPRNAAAGSLRQLDPRITASRPLSLFLYECVPGEGVP
AFRSHTEKLGYLRSLGLPVNRAVSVPSVEGVREQYRASLEGRHALPFEVDGMVVKVDDED
LRQRLGQVSKSPRWAVAYKFPPEEESTLVEDIQVYVGRTGALTPVAHLKPVKVGGVTVSR
ATLHNEDELRRKDVRKGDTVFIRRAGDVIPEIVKVVEGKRPEGTESFVFPTECPVCHAAA
VKDEEGAIIRCTGATCPAQLVEKVRHFASRTAMDVDGLGEKLAAQLVETGLVKSFADVYH
LTRAKLLTLERMGDKSADNLLASIERSKQTTQPRFLYALGIRHVGESTARVLAEAFPDVR
GLYEASLEDITRVKDVGPTMAEVIHTFFHEPLNREAIDALLAAGVTPAPPVVVKTGVFAG
KTVVLTGGMSGMSREQAKEEIERRGGKVSGSVSRKTDLVVAGEDAGSKLKKAQELGVRIV
DEQAFLQLLQTDARG
NT seq 2028 nt   +upstreamnt  +downstreamnt
gtgaccgcctcgaaaaccgctgacgccgcccgcatcgggcagctccgaaaagaactcgcc
taccacaaccaccgctactacgtgctcgactcgccggaggtgagcgacgcggaatacgac
cggctcatgcgcgagctgcaggagctggagtcccgccatccggacctcgtcacggccgac
tcgcccactcgccgggtgggaggcgctccggcggagaagttcgagaaggtgcgccaccgc
gtggccatgttgtcgctggccaacgtcttcgacgacgaggggttgagcgacttcgacgag
cgcatccgccgccagacggggctcgcccaggtgggctacgtctgcgagcccaagctggat
gggctcgccatcaccctgacctacgagcagggccgcttcgtgcgcggcgccacgcgggga
gatgggaccgagggagaggacgtgagcgcgaacctgcgcaccctgcgcggcctgcccacg
gagctgttgccccaggacggggtgaaggcgcccgggatgattgaagtgcgcggcgaggtc
ttcatctccaagaaggacttcaagcggctcaacgacaagcgcgaggaggagggcgagccg
ctcttcgccaacccgcgcaacgccgccgccggcagcctacgccagttggatccccgcatc
accgcctcgcggccgctgtcgctcttcctgtacgagtgcgtgccgggcgagggcgtgccc
gccttccgctcgcacaccgagaagctcggctacctgcgctcgctggggctgccggtgaac
cgggcggtgagcgtgccgagcgtggagggcgtgcgcgagcagtaccgcgcgagcctggag
ggccgccatgcgctgcccttcgaggtggacggcatggtggtgaaggtggacgacgaggac
ctgcgccagcgcctgggccaggtgtccaagagtccgcgctgggccgtggcctacaagttc
ccgcccgaggaggagtcgacgctcgtcgaggacatccaggtgtacgtggggcgcacgggc
gcgctcacgccggtggcgcacctcaagccggtgaaggtgggcggcgtgacggtgagccgc
gccaccctgcacaacgaggacgagctgcgccgcaaggacgtgcgcaagggcgacaccgtc
ttcatccgccgcgcgggcgacgtcatcccggagatcgtcaaggtggtggagggcaagcgg
cccgaaggcaccgagtccttcgtcttccccaccgagtgcccggtgtgccacgcggcggcc
gtcaaggacgaggagggcgccatcatccgctgcacgggcgccacctgccccgcgcagctc
gtggagaaggtccgccacttcgcctcgcgcaccgccatggacgtggacggcctgggagag
aagctggccgcgcagctcgtggagacggggctggtgaagagcttcgcggacgtctaccac
ctcacgcgagcgaagctcctcacgctcgagcgcatgggggacaagagcgcggacaacctg
ctggcgagcatcgagcgctccaagcagaccacccagcctcgcttcctctacgcgctgggc
atccggcacgtgggcgagtccaccgcgcgcgtgctcgccgaggccttccccgacgtgcgc
ggcctctacgaggccagcctggaggacatcacccgcgtcaaggacgtgggtcccaccatg
gccgaggtcatccataccttcttccatgagccgctcaatcgcgaggccatcgacgcgctg
ctcgccgcgggcgtcacccccgcgccgcccgtcgtcgtcaagacgggcgtgttcgctggc
aagacggtggttctcaccgggggtatgagtggaatgagccgggagcaagccaaggaggaa
atcgagcgccggggtggcaaggtgtcgggaagtgtctcgcgcaagacggacctggtggtg
gcgggcgaggatgcgggcagcaagctgaagaaggcccaggagctcggagtaagaatcgtg
gacgagcaggccttcctccaattgctccagacggacgcacgaggctag

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