Cystobacter fuscus: CYFUS_007856
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Entry
CYFUS_007856 CDS
T05065
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfus
Cystobacter fuscus
Pathway
cfus03030
DNA replication
cfus03410
Base excision repair
cfus03420
Nucleotide excision repair
cfus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CYFUS_007856
03410 Base excision repair
CYFUS_007856
03420 Nucleotide excision repair
CYFUS_007856
03430 Mismatch repair
CYFUS_007856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfus03032
]
CYFUS_007856
03400 DNA repair and recombination proteins [BR:
cfus03400
]
CYFUS_007856
Enzymes [BR:
cfus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CYFUS_007856
DNA replication proteins [BR:
cfus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CYFUS_007856
DNA repair and recombination proteins [BR:
cfus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CYFUS_007856
NER (nucleotide excision repair)
GGR (global genome repair) factors
CYFUS_007856
MMR (mismatch excision repair)
DNA ligase
CYFUS_007856
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CYFUS_007856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
YiiM_3-alpha
LysW-like_globular
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ATB42378
UniProt:
A0A250JFK2
LinkDB
All DBs
Position
9821922..9823949
Genome browser
AA seq
675 aa
AA seq
DB search
MTASKTADAARIGQLRKELAYHNHRYYVLDSPEVSDAEYDRLMRELQELESRHPDLVTAD
SPTRRVGGAPAEKFEKVRHRVAMLSLANVFDDEGLSDFDERIRRQTGLAQVGYVCEPKLD
GLAITLTYEQGRFVRGATRGDGTEGEDVSANLRTLRGLPTELLPQDGVKAPGMIEVRGEV
FISKKDFKRLNDKREEEGEPLFANPRNAAAGSLRQLDPRITASRPLSLFLYECVPGEGVP
AFRSHTEKLGYLRSLGLPVNRAVSVPSVEGVREQYRASLEGRHALPFEVDGMVVKVDDED
LRQRLGQVSKSPRWAVAYKFPPEEESTLVEDIQVYVGRTGALTPVAHLKPVKVGGVTVSR
ATLHNEDELRRKDVRKGDTVFIRRAGDVIPEIVKVVEGKRPEGTESFVFPTECPVCHAAA
VKDEEGAIIRCTGATCPAQLVEKVRHFASRTAMDVDGLGEKLAAQLVETGLVKSFADVYH
LTRAKLLTLERMGDKSADNLLASIERSKQTTQPRFLYALGIRHVGESTARVLAEAFPDVR
GLYEASLEDITRVKDVGPTMAEVIHTFFHEPLNREAIDALLAAGVTPAPPVVVKTGVFAG
KTVVLTGGMSGMSREQAKEEIERRGGKVSGSVSRKTDLVVAGEDAGSKLKKAQELGVRIV
DEQAFLQLLQTDARG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcctcgaaaaccgctgacgccgcccgcatcgggcagctccgaaaagaactcgcc
taccacaaccaccgctactacgtgctcgactcgccggaggtgagcgacgcggaatacgac
cggctcatgcgcgagctgcaggagctggagtcccgccatccggacctcgtcacggccgac
tcgcccactcgccgggtgggaggcgctccggcggagaagttcgagaaggtgcgccaccgc
gtggccatgttgtcgctggccaacgtcttcgacgacgaggggttgagcgacttcgacgag
cgcatccgccgccagacggggctcgcccaggtgggctacgtctgcgagcccaagctggat
gggctcgccatcaccctgacctacgagcagggccgcttcgtgcgcggcgccacgcgggga
gatgggaccgagggagaggacgtgagcgcgaacctgcgcaccctgcgcggcctgcccacg
gagctgttgccccaggacggggtgaaggcgcccgggatgattgaagtgcgcggcgaggtc
ttcatctccaagaaggacttcaagcggctcaacgacaagcgcgaggaggagggcgagccg
ctcttcgccaacccgcgcaacgccgccgccggcagcctacgccagttggatccccgcatc
accgcctcgcggccgctgtcgctcttcctgtacgagtgcgtgccgggcgagggcgtgccc
gccttccgctcgcacaccgagaagctcggctacctgcgctcgctggggctgccggtgaac
cgggcggtgagcgtgccgagcgtggagggcgtgcgcgagcagtaccgcgcgagcctggag
ggccgccatgcgctgcccttcgaggtggacggcatggtggtgaaggtggacgacgaggac
ctgcgccagcgcctgggccaggtgtccaagagtccgcgctgggccgtggcctacaagttc
ccgcccgaggaggagtcgacgctcgtcgaggacatccaggtgtacgtggggcgcacgggc
gcgctcacgccggtggcgcacctcaagccggtgaaggtgggcggcgtgacggtgagccgc
gccaccctgcacaacgaggacgagctgcgccgcaaggacgtgcgcaagggcgacaccgtc
ttcatccgccgcgcgggcgacgtcatcccggagatcgtcaaggtggtggagggcaagcgg
cccgaaggcaccgagtccttcgtcttccccaccgagtgcccggtgtgccacgcggcggcc
gtcaaggacgaggagggcgccatcatccgctgcacgggcgccacctgccccgcgcagctc
gtggagaaggtccgccacttcgcctcgcgcaccgccatggacgtggacggcctgggagag
aagctggccgcgcagctcgtggagacggggctggtgaagagcttcgcggacgtctaccac
ctcacgcgagcgaagctcctcacgctcgagcgcatgggggacaagagcgcggacaacctg
ctggcgagcatcgagcgctccaagcagaccacccagcctcgcttcctctacgcgctgggc
atccggcacgtgggcgagtccaccgcgcgcgtgctcgccgaggccttccccgacgtgcgc
ggcctctacgaggccagcctggaggacatcacccgcgtcaaggacgtgggtcccaccatg
gccgaggtcatccataccttcttccatgagccgctcaatcgcgaggccatcgacgcgctg
ctcgccgcgggcgtcacccccgcgccgcccgtcgtcgtcaagacgggcgtgttcgctggc
aagacggtggttctcaccgggggtatgagtggaatgagccgggagcaagccaaggaggaa
atcgagcgccggggtggcaaggtgtcgggaagtgtctcgcgcaagacggacctggtggtg
gcgggcgaggatgcgggcagcaagctgaagaaggcccaggagctcggagtaagaatcgtg
gacgagcaggccttcctccaattgctccagacggacgcacgaggctag
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